The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA
Analysis of Phrynosoma blainvillii Gray from Marina, Monterey County, California, using 150 bp paired-end Illumina sequences (Illumina, San Diego, CA) resulted in the assembly of its complete mitogenome. The mitogenome is 16,946 bp in length and contains a putative origin of light strand replication...
| Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2017-12-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2017.1407706 |
| _version_ | 1827774269149413376 |
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| author | Laura Ayala Ga Hun Boo Sung Min Boo Brandon Cluff Gage H. Dayton Leah Edwards Armando Garcia Mariana Gomez Thomas A. Jimenez Jeffery R. Hughey Timothy Huynh Natalia I. Marquez Ana I. Meza Alexis D. Munoz Cristina Perez Dominic Pina Michael Porras Paola E. Razo Alexis Rosales Bailee Rusconi Noel Salvador Alicia Steinhardt Ruben Tinajero Nancy Wheat Frances L. Wong Ann Wright Hartnell College Genomics Group |
| author_facet | Laura Ayala Ga Hun Boo Sung Min Boo Brandon Cluff Gage H. Dayton Leah Edwards Armando Garcia Mariana Gomez Thomas A. Jimenez Jeffery R. Hughey Timothy Huynh Natalia I. Marquez Ana I. Meza Alexis D. Munoz Cristina Perez Dominic Pina Michael Porras Paola E. Razo Alexis Rosales Bailee Rusconi Noel Salvador Alicia Steinhardt Ruben Tinajero Nancy Wheat Frances L. Wong Ann Wright Hartnell College Genomics Group |
| author_sort | Laura Ayala |
| collection | DOAJ |
| description | Analysis of Phrynosoma blainvillii Gray from Marina, Monterey County, California, using 150 bp paired-end Illumina sequences (Illumina, San Diego, CA) resulted in the assembly of its complete mitogenome. The mitogenome is 16,946 bp in length and contains a putative origin of light strand replication (OL), control region, 22 tRNA, 2 rRNA, and 13 protein-coding genes. Its content and organization are similar to other Squamata. Phylogenetic analysis of P. blainvillii resolves it in a clade with P. sherbrookei Nieto-Montes de Oca, Arenas-Moreno, Beltrán-Sánchez & Leaché, sister in position to Uma notata Baird. Mitochondrial marker analysis of P. blainvillii from Marina shows that it belongs to a coastal Santa Lucia Mountain Range haplogroup that is distinct from other populations of P. blainvillii in California. |
| first_indexed | 2024-03-11T13:36:07Z |
| format | Article |
| id | doaj.art-2d59dc444545486289f58527808de100 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:36:07Z |
| publishDate | 2017-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-2d59dc444545486289f58527808de1002023-11-02T15:42:59ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-12-012285185210.1080/23802359.2017.14077061407706The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USALaura Ayala0Ga Hun Boo1Sung Min Boo2Brandon Cluff3Gage H. Dayton4Leah Edwards5Armando Garcia6Mariana Gomez7Thomas A. Jimenez8Jeffery R. Hughey9Timothy Huynh10Natalia I. Marquez11Ana I. Meza12Alexis D. Munoz13Cristina Perez14Dominic Pina15Michael Porras16Paola E. Razo17Alexis Rosales18Bailee Rusconi19Noel Salvador20Alicia Steinhardt21Ruben Tinajero22Nancy Wheat23Frances L. Wong24Ann Wright25Hartnell College Genomics GroupHartnell CollegeUniversity Herbarium, University of CaliforniaChungnam National UniversityUniversity of CaliforniaUniversity of California Natural ReservesHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeUniversity of CaliforniaHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeHartnell CollegeAnalysis of Phrynosoma blainvillii Gray from Marina, Monterey County, California, using 150 bp paired-end Illumina sequences (Illumina, San Diego, CA) resulted in the assembly of its complete mitogenome. The mitogenome is 16,946 bp in length and contains a putative origin of light strand replication (OL), control region, 22 tRNA, 2 rRNA, and 13 protein-coding genes. Its content and organization are similar to other Squamata. Phylogenetic analysis of P. blainvillii resolves it in a clade with P. sherbrookei Nieto-Montes de Oca, Arenas-Moreno, Beltrán-Sánchez & Leaché, sister in position to Uma notata Baird. Mitochondrial marker analysis of P. blainvillii from Marina shows that it belongs to a coastal Santa Lucia Mountain Range haplogroup that is distinct from other populations of P. blainvillii in California.http://dx.doi.org/10.1080/23802359.2017.1407706horned lizardmitogenomephrynosoma blainvilliiphrynosomatidaespecial concernsquamata |
| spellingShingle | Laura Ayala Ga Hun Boo Sung Min Boo Brandon Cluff Gage H. Dayton Leah Edwards Armando Garcia Mariana Gomez Thomas A. Jimenez Jeffery R. Hughey Timothy Huynh Natalia I. Marquez Ana I. Meza Alexis D. Munoz Cristina Perez Dominic Pina Michael Porras Paola E. Razo Alexis Rosales Bailee Rusconi Noel Salvador Alicia Steinhardt Ruben Tinajero Nancy Wheat Frances L. Wong Ann Wright Hartnell College Genomics Group The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA Mitochondrial DNA. Part B. Resources horned lizard mitogenome phrynosoma blainvillii phrynosomatidae special concern squamata |
| title | The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA |
| title_full | The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA |
| title_fullStr | The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA |
| title_full_unstemmed | The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA |
| title_short | The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA |
| title_sort | complete mitochondrial genome of the horned lizard phrynosoma blainvillii squamata phrynosomatidae from california usa |
| topic | horned lizard mitogenome phrynosoma blainvillii phrynosomatidae special concern squamata |
| url | http://dx.doi.org/10.1080/23802359.2017.1407706 |
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