The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China
Scutellaria tsinyunensis (Lamiaceae) is an endangered species endemic to Mt. Jinyun of Chongqing, China. In this study, the complete chloroplast (cp) genome of S. tsinyunensis was sequenced and characterized. The cp genome is 152,066 bp in length with a typical quadripartite structure, containing a...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1781562 |
| _version_ | 1797639133911318528 |
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| author | Xiangning Liu Youwei Zuo Le Lin Wenqiao Li Qian Wang Hongping Deng |
| author_facet | Xiangning Liu Youwei Zuo Le Lin Wenqiao Li Qian Wang Hongping Deng |
| author_sort | Xiangning Liu |
| collection | DOAJ |
| description | Scutellaria tsinyunensis (Lamiaceae) is an endangered species endemic to Mt. Jinyun of Chongqing, China. In this study, the complete chloroplast (cp) genome of S. tsinyunensis was sequenced and characterized. The cp genome is 152,066 bp in length with a typical quadripartite structure, containing a pair of inverted repeats (IRs) of 25,223 bp separated by a large single-copy (LSC) region and a small single-copy (SSC) region of 84,096 bp and 17,524 bp, respectively. The whole cp genome contains 130 genes, including 86 protein-coding genes, 36 tRNA genes, and eight rRNA genes. The overall GC content of the circular genome is 38.4%, whereas the corresponding values in LSC, SSC, and IR regions are 36.4, 32.6, and 43.6%, respectively. The phylogenetic analysis based on the complete cp genomes of the Lamiaceae family indicated that S. tsinyunensis was closely related to S. insignis. |
| first_indexed | 2024-03-11T13:13:27Z |
| format | Article |
| id | doaj.art-2d6c8d5a9f244cc79e45c7eb166a34aa |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:13:27Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-2d6c8d5a9f244cc79e45c7eb166a34aa2023-11-03T14:00:30ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01532568257010.1080/23802359.2020.17815621781562The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from ChinaXiangning Liu0Youwei Zuo1Le Lin2Wenqiao Li3Qian Wang4Hongping Deng5Chongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Institute of Resources Botany, School of Life Sciences, Southwest UniversityChongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Institute of Resources Botany, School of Life Sciences, Southwest UniversityChongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Institute of Resources Botany, School of Life Sciences, Southwest UniversityChongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Institute of Resources Botany, School of Life Sciences, Southwest UniversityChongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Institute of Resources Botany, School of Life Sciences, Southwest UniversityChongqing Key Laboratory of Plant Resource Conservation and Germplasm Innovation, Institute of Resources Botany, School of Life Sciences, Southwest UniversityScutellaria tsinyunensis (Lamiaceae) is an endangered species endemic to Mt. Jinyun of Chongqing, China. In this study, the complete chloroplast (cp) genome of S. tsinyunensis was sequenced and characterized. The cp genome is 152,066 bp in length with a typical quadripartite structure, containing a pair of inverted repeats (IRs) of 25,223 bp separated by a large single-copy (LSC) region and a small single-copy (SSC) region of 84,096 bp and 17,524 bp, respectively. The whole cp genome contains 130 genes, including 86 protein-coding genes, 36 tRNA genes, and eight rRNA genes. The overall GC content of the circular genome is 38.4%, whereas the corresponding values in LSC, SSC, and IR regions are 36.4, 32.6, and 43.6%, respectively. The phylogenetic analysis based on the complete cp genomes of the Lamiaceae family indicated that S. tsinyunensis was closely related to S. insignis.http://dx.doi.org/10.1080/23802359.2020.1781562scutellaria tsinyunensischloroplast genomephylogenetic analysis lamiaceae |
| spellingShingle | Xiangning Liu Youwei Zuo Le Lin Wenqiao Li Qian Wang Hongping Deng The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China Mitochondrial DNA. Part B. Resources scutellaria tsinyunensis chloroplast genome phylogenetic analysis lamiaceae |
| title | The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China |
| title_full | The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China |
| title_fullStr | The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China |
| title_full_unstemmed | The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China |
| title_short | The complete chloroplast genome of Scutellaria tsinyunensis (Lamiaceae), an endemic species from China |
| title_sort | complete chloroplast genome of scutellaria tsinyunensis lamiaceae an endemic species from china |
| topic | scutellaria tsinyunensis chloroplast genome phylogenetic analysis lamiaceae |
| url | http://dx.doi.org/10.1080/23802359.2020.1781562 |
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