The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia
Ficus sarmentosa is a common climbing fig tree in East Asia in Moraceae, and its particular geographical distributed pattern and on-going radiation evolution make it significant to explore evolutionary history and biogeography of Ficus. In this work, the first complete chloroplast genome of F. sarme...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2022-09-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2022.2115860 |
| _version_ | 1797638559204638720 |
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| author | Zhen Zhang De-Shun Zhang |
| author_facet | Zhen Zhang De-Shun Zhang |
| author_sort | Zhen Zhang |
| collection | DOAJ |
| description | Ficus sarmentosa is a common climbing fig tree in East Asia in Moraceae, and its particular geographical distributed pattern and on-going radiation evolution make it significant to explore evolutionary history and biogeography of Ficus. In this work, the first complete chloroplast genome of F. sarmentosa was reported using Illumina NovaSeq high-throughput sequencing data. Totally, the whole chloroplast genome of F. sarmentosa is 160,183 bp in length, which includes large single-copy region of 88,307 bp, small single-copy region of 20,080 bp, and two pairs of inverted repeat regions of 25,898 bp. In addition, GC content and microsatellite makers of the genome were explored. Lastly, phylogenetic analysis demonstrated the closest relationship between F. sarmentosa and F. pumila. |
| first_indexed | 2024-03-11T13:04:20Z |
| format | Article |
| id | doaj.art-2d87503db3e1412ca6322b0ccace0cac |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:04:20Z |
| publishDate | 2022-09-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-2d87503db3e1412ca6322b0ccace0cac2023-11-03T14:44:04ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-09-01791597159810.1080/23802359.2022.21158602115860The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East AsiaZhen Zhang0De-Shun Zhang1College of Architecture and Urban Planning, Tongji UniversityCollege of Architecture and Urban Planning, Tongji UniversityFicus sarmentosa is a common climbing fig tree in East Asia in Moraceae, and its particular geographical distributed pattern and on-going radiation evolution make it significant to explore evolutionary history and biogeography of Ficus. In this work, the first complete chloroplast genome of F. sarmentosa was reported using Illumina NovaSeq high-throughput sequencing data. Totally, the whole chloroplast genome of F. sarmentosa is 160,183 bp in length, which includes large single-copy region of 88,307 bp, small single-copy region of 20,080 bp, and two pairs of inverted repeat regions of 25,898 bp. In addition, GC content and microsatellite makers of the genome were explored. Lastly, phylogenetic analysis demonstrated the closest relationship between F. sarmentosa and F. pumila.http://dx.doi.org/10.1080/23802359.2022.2115860ficusplastid genomeclimbing figphylogenomics |
| spellingShingle | Zhen Zhang De-Shun Zhang The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia Mitochondrial DNA. Part B. Resources ficus plastid genome climbing fig phylogenomics |
| title | The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia |
| title_full | The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia |
| title_fullStr | The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia |
| title_full_unstemmed | The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia |
| title_short | The complete chloroplast genome sequence of Ficus sarmentosa (Moraceae, Rosales), a widely distributed fig tree in East Asia |
| title_sort | complete chloroplast genome sequence of ficus sarmentosa moraceae rosales a widely distributed fig tree in east asia |
| topic | ficus plastid genome climbing fig phylogenomics |
| url | http://dx.doi.org/10.1080/23802359.2022.2115860 |
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