Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance
Camellia yuhsienensis Hu is an economically valuable species in the genus Camellia. It is widely used for breeding ornaments and oil varieties. In this study, the complete chloroplast (cp) genome sequence of C. yuhsienensis is assembled and annotated. The whole cp genome of C. yuhsienensis is 156,91...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2020-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1797580 |
| _version_ | 1797639134359060480 |
|---|---|
| author | Ziyan Nie Xingzhao Huang Zhikang Hu Xinlei Li Hengfu Yin Jiyuan Li |
| author_facet | Ziyan Nie Xingzhao Huang Zhikang Hu Xinlei Li Hengfu Yin Jiyuan Li |
| author_sort | Ziyan Nie |
| collection | DOAJ |
| description | Camellia yuhsienensis Hu is an economically valuable species in the genus Camellia. It is widely used for breeding ornaments and oil varieties. In this study, the complete chloroplast (cp) genome sequence of C. yuhsienensis is assembled and annotated. The whole cp genome of C. yuhsienensis is 156,912 bp in size, composed of a small single copy (SSC) region of 18,296 bp and a large single copy (LSC) region of 86,560 bp, separated by a pair of inverted repeats (IRs, IRA: 86,561–112,588; IRB: 130,885–156,912). The overall GC content of C. yuhsienensis cp genome is 37.3%, with the base content A (31.08%), T (31.63%), C (19.02%), and G (18.27%). The phylogenetic analysis of 15 Camellia species based on 77 protein-coding genes shows that C. yuhsienensis is evolutionarily close to Camellia taliensis. |
| first_indexed | 2024-03-11T13:12:22Z |
| format | Article |
| id | doaj.art-2de969f375004d66aed70153f6683c55 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:12:22Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-2de969f375004d66aed70153f6683c552023-11-03T14:00:32ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01532998299910.1080/23802359.2020.17975801797580Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragranceZiyan Nie0Xingzhao Huang1Zhikang Hu2Xinlei Li3Hengfu Yin4Jiyuan Li5School of Forestry and Landscape Architecture, Anhui Agricultural UniversitySchool of Forestry and Landscape Architecture, Anhui Agricultural UniversityKey Laboratory of Forest Genetics and Breeding, Research Institute of Subtropical Forestry, Chinese Academy of ForestryKey Laboratory of Forest Genetics and Breeding, Research Institute of Subtropical Forestry, Chinese Academy of ForestryKey Laboratory of Forest Genetics and Breeding, Research Institute of Subtropical Forestry, Chinese Academy of ForestryKey Laboratory of Forest Genetics and Breeding, Research Institute of Subtropical Forestry, Chinese Academy of ForestryCamellia yuhsienensis Hu is an economically valuable species in the genus Camellia. It is widely used for breeding ornaments and oil varieties. In this study, the complete chloroplast (cp) genome sequence of C. yuhsienensis is assembled and annotated. The whole cp genome of C. yuhsienensis is 156,912 bp in size, composed of a small single copy (SSC) region of 18,296 bp and a large single copy (LSC) region of 86,560 bp, separated by a pair of inverted repeats (IRs, IRA: 86,561–112,588; IRB: 130,885–156,912). The overall GC content of C. yuhsienensis cp genome is 37.3%, with the base content A (31.08%), T (31.63%), C (19.02%), and G (18.27%). The phylogenetic analysis of 15 Camellia species based on 77 protein-coding genes shows that C. yuhsienensis is evolutionarily close to Camellia taliensis.http://dx.doi.org/10.1080/23802359.2020.1797580camellia yuhsienensis huchloroplast genomephylogenetic analysis |
| spellingShingle | Ziyan Nie Xingzhao Huang Zhikang Hu Xinlei Li Hengfu Yin Jiyuan Li Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance Mitochondrial DNA. Part B. Resources camellia yuhsienensis hu chloroplast genome phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance |
| title_full | Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance |
| title_fullStr | Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance |
| title_short | Characterization of the complete chloroplast genome of Camellia yuhsienensis Hu, a resilient shrub with strong floral fragrance |
| title_sort | characterization of the complete chloroplast genome of camellia yuhsienensis hu a resilient shrub with strong floral fragrance |
| topic | camellia yuhsienensis hu chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1797580 |
| work_keys_str_mv | AT ziyannie characterizationofthecompletechloroplastgenomeofcamelliayuhsienensishuaresilientshrubwithstrongfloralfragrance AT xingzhaohuang characterizationofthecompletechloroplastgenomeofcamelliayuhsienensishuaresilientshrubwithstrongfloralfragrance AT zhikanghu characterizationofthecompletechloroplastgenomeofcamelliayuhsienensishuaresilientshrubwithstrongfloralfragrance AT xinleili characterizationofthecompletechloroplastgenomeofcamelliayuhsienensishuaresilientshrubwithstrongfloralfragrance AT hengfuyin characterizationofthecompletechloroplastgenomeofcamelliayuhsienensishuaresilientshrubwithstrongfloralfragrance AT jiyuanli characterizationofthecompletechloroplastgenomeofcamelliayuhsienensishuaresilientshrubwithstrongfloralfragrance |