The complete chloroplast genome sequence of Styrax serrulatus Roxburgh (Styracaceae)
Styrax serrulatus Roxburgh (William Roxburgh 1832), which plays an important role in ecology and economy, is a deciduous species of Styracaceae. In this paper, we sequenced, assembled, and annotated the chloroplast (cp) genome of S. serrulatus by using the sequencing data from Illumina Novaseq platf...
| Main Authors: | , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2021-11-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1987170 |
| _version_ | 1827772290243231744 |
|---|---|
| author | Lu Tian Xiaogang Xu Lili Tong Chongli Xia Yao Cheng |
| author_facet | Lu Tian Xiaogang Xu Lili Tong Chongli Xia Yao Cheng |
| author_sort | Lu Tian |
| collection | DOAJ |
| description | Styrax serrulatus Roxburgh (William Roxburgh 1832), which plays an important role in ecology and economy, is a deciduous species of Styracaceae. In this paper, we sequenced, assembled, and annotated the chloroplast (cp) genome of S. serrulatus by using the sequencing data from Illumina Novaseq platform (Illumina, San Diego, CA). The complete cp genome of S. serrulatus is 157,929 base pairs (bp) in length, containing a pair of inverted repeat regions (IRs) of 26,048 bp each, a large single-copy (LSC) region of 87,552 bp, and a small single-copy (SSC) region of 18,281 bp. It contains 133 genes, including 8 rRNA genes, 37 tRNA genes, 87 protein-coding genes, and 1 pseudo gene. The GC content of S. serrulatus cp genome is 36.96%. The phylogenetic analysis suggests that S. serrulatus is a sister species to Styrax agrestis in Styracaceae. |
| first_indexed | 2024-03-11T13:07:15Z |
| format | Article |
| id | doaj.art-2e1005f0c3354dbab7708a45264ca6ee |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:07:15Z |
| publishDate | 2021-11-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-2e1005f0c3354dbab7708a45264ca6ee2023-11-03T14:28:31ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-11-016113156315810.1080/23802359.2021.19871701987170The complete chloroplast genome sequence of Styrax serrulatus Roxburgh (Styracaceae)Lu Tian0Xiaogang Xu1Lili Tong2Chongli Xia3Yao Cheng4Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Key Laboratory of State Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, Nanjing Forestry UniversityCo-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Key Laboratory of State Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, Nanjing Forestry UniversitySchool of Horticulture & Landscape Architecture, Jinling Institute of TechnologySchool of Horticulture & Landscape Architecture, Jinling Institute of TechnologyCo-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Key Laboratory of State Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, Nanjing Forestry UniversityStyrax serrulatus Roxburgh (William Roxburgh 1832), which plays an important role in ecology and economy, is a deciduous species of Styracaceae. In this paper, we sequenced, assembled, and annotated the chloroplast (cp) genome of S. serrulatus by using the sequencing data from Illumina Novaseq platform (Illumina, San Diego, CA). The complete cp genome of S. serrulatus is 157,929 base pairs (bp) in length, containing a pair of inverted repeat regions (IRs) of 26,048 bp each, a large single-copy (LSC) region of 87,552 bp, and a small single-copy (SSC) region of 18,281 bp. It contains 133 genes, including 8 rRNA genes, 37 tRNA genes, 87 protein-coding genes, and 1 pseudo gene. The GC content of S. serrulatus cp genome is 36.96%. The phylogenetic analysis suggests that S. serrulatus is a sister species to Styrax agrestis in Styracaceae.http://dx.doi.org/10.1080/23802359.2021.1987170styrax serrulatusphylogenomicsstyracaceaecomplete chloroplast genome |
| spellingShingle | Lu Tian Xiaogang Xu Lili Tong Chongli Xia Yao Cheng The complete chloroplast genome sequence of Styrax serrulatus Roxburgh (Styracaceae) Mitochondrial DNA. Part B. Resources styrax serrulatus phylogenomics styracaceae complete chloroplast genome |
| title | The complete chloroplast genome sequence of Styrax serrulatus Roxburgh (Styracaceae) |
| title_full | The complete chloroplast genome sequence of Styrax serrulatus Roxburgh (Styracaceae) |
| title_fullStr | The complete chloroplast genome sequence of Styrax serrulatus Roxburgh (Styracaceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of Styrax serrulatus Roxburgh (Styracaceae) |
| title_short | The complete chloroplast genome sequence of Styrax serrulatus Roxburgh (Styracaceae) |
| title_sort | complete chloroplast genome sequence of styrax serrulatus roxburgh styracaceae |
| topic | styrax serrulatus phylogenomics styracaceae complete chloroplast genome |
| url | http://dx.doi.org/10.1080/23802359.2021.1987170 |
| work_keys_str_mv | AT lutian thecompletechloroplastgenomesequenceofstyraxserrulatusroxburghstyracaceae AT xiaogangxu thecompletechloroplastgenomesequenceofstyraxserrulatusroxburghstyracaceae AT lilitong thecompletechloroplastgenomesequenceofstyraxserrulatusroxburghstyracaceae AT chonglixia thecompletechloroplastgenomesequenceofstyraxserrulatusroxburghstyracaceae AT yaocheng thecompletechloroplastgenomesequenceofstyraxserrulatusroxburghstyracaceae AT lutian completechloroplastgenomesequenceofstyraxserrulatusroxburghstyracaceae AT xiaogangxu completechloroplastgenomesequenceofstyraxserrulatusroxburghstyracaceae AT lilitong completechloroplastgenomesequenceofstyraxserrulatusroxburghstyracaceae AT chonglixia completechloroplastgenomesequenceofstyraxserrulatusroxburghstyracaceae AT yaocheng completechloroplastgenomesequenceofstyraxserrulatusroxburghstyracaceae |