Previous immunity shapes immune responses to SARS-CoV-2 booster vaccination and Omicron breakthrough infection risk

Abstract The heterogeneity of the SARS-CoV-2 immune responses has become considerably more complex over time and diverse immune imprinting is observed in vaccinated individuals. Despite vaccination, following the emergence of the Omicron variant, some individuals appear more susceptible to primary i...

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Main Authors: Laura Pérez-Alós, Cecilie Bo Hansen, Jose Juan Almagro Armenteros, Johannes Roth Madsen, Line Dam Heftdal, Rasmus Bo Hasselbalch, Mia Marie Pries-Heje, Rafael Bayarri-Olmos, Ida Jarlhelt, Sebastian Rask Hamm, Dina Leth Møller, Erik Sørensen, Sisse Rye Ostrowski, Ruth Frikke-Schmidt, Linda Maria Hilsted, Henning Bundgaard, Susanne Dam Nielsen, Kasper Karmark Iversen, Peter Garred
Format: Article
Language:English
Published: Nature Portfolio 2023-09-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-023-41342-2
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author Laura Pérez-Alós
Cecilie Bo Hansen
Jose Juan Almagro Armenteros
Johannes Roth Madsen
Line Dam Heftdal
Rasmus Bo Hasselbalch
Mia Marie Pries-Heje
Rafael Bayarri-Olmos
Ida Jarlhelt
Sebastian Rask Hamm
Dina Leth Møller
Erik Sørensen
Sisse Rye Ostrowski
Ruth Frikke-Schmidt
Linda Maria Hilsted
Henning Bundgaard
Susanne Dam Nielsen
Kasper Karmark Iversen
Peter Garred
author_facet Laura Pérez-Alós
Cecilie Bo Hansen
Jose Juan Almagro Armenteros
Johannes Roth Madsen
Line Dam Heftdal
Rasmus Bo Hasselbalch
Mia Marie Pries-Heje
Rafael Bayarri-Olmos
Ida Jarlhelt
Sebastian Rask Hamm
Dina Leth Møller
Erik Sørensen
Sisse Rye Ostrowski
Ruth Frikke-Schmidt
Linda Maria Hilsted
Henning Bundgaard
Susanne Dam Nielsen
Kasper Karmark Iversen
Peter Garred
author_sort Laura Pérez-Alós
collection DOAJ
description Abstract The heterogeneity of the SARS-CoV-2 immune responses has become considerably more complex over time and diverse immune imprinting is observed in vaccinated individuals. Despite vaccination, following the emergence of the Omicron variant, some individuals appear more susceptible to primary infections and reinfections than others, underscoring the need to elucidate how immune responses are influenced by previous infections and vaccination. IgG, IgA, neutralizing antibodies and T-cell immune responses in 1,325 individuals (955 of which were infection-naive) were investigated before and after three doses of the BNT162b2 vaccine, examining their relation to breakthrough infections and immune imprinting in the context of Omicron. Our study shows that both humoral and cellular responses following vaccination were generally higher after SARS-CoV-2 infection compared to infection-naive. Notably, viral exposure before vaccination was crucial to achieving a robust IgA response. Individuals with lower IgG, IgA, and neutralizing antibody responses postvaccination had a significantly higher risk of reinfection and future Omicron infections. This was not observed for T-cell responses. A primary infection before Omicron and subsequent reinfection with Omicron dampened the humoral and cellular responses compared to a primary Omicron infection, consistent with immune imprinting. These results underscore the significant impact of hybrid immunity for immune responses in general, particularly for IgA responses even after revaccination, and the importance of robust humoral responses in preventing future infections.
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spelling doaj.art-2ef96c1488124dbea961ebe8604caa6d2023-11-20T10:06:36ZengNature PortfolioNature Communications2041-17232023-09-0114111510.1038/s41467-023-41342-2Previous immunity shapes immune responses to SARS-CoV-2 booster vaccination and Omicron breakthrough infection riskLaura Pérez-Alós0Cecilie Bo Hansen1Jose Juan Almagro Armenteros2Johannes Roth Madsen3Line Dam Heftdal4Rasmus Bo Hasselbalch5Mia Marie Pries-Heje6Rafael Bayarri-Olmos7Ida Jarlhelt8Sebastian Rask Hamm9Dina Leth Møller10Erik Sørensen11Sisse Rye Ostrowski12Ruth Frikke-Schmidt13Linda Maria Hilsted14Henning Bundgaard15Susanne Dam Nielsen16Kasper Karmark Iversen17Peter Garred18Laboratory of Molecular Medicine, Department of Clinical Immunology, Section 7631, Copenhagen University Hospital, RigshospitaletLaboratory of Molecular Medicine, Department of Clinical Immunology, Section 7631, Copenhagen University Hospital, RigshospitaletDepartment of Genetics, Stanford University School of MedicineLaboratory of Molecular Medicine, Department of Clinical Immunology, Section 7631, Copenhagen University Hospital, RigshospitaletViro-immunology Research Unit, Department of Infectious Diseases, Section 8632, Copenhagen University Hospital, RigshospitaletDepartment of Cardiology, Copenhagen University Hospital Herlev and GentofteThe Heart Center, Department of Cardiology, Copenhagen University Hospital, RigshospitaletLaboratory of Molecular Medicine, Department of Clinical Immunology, Section 7631, Copenhagen University Hospital, RigshospitaletLaboratory of Molecular Medicine, Department of Clinical Immunology, Section 7631, Copenhagen University Hospital, RigshospitaletViro-immunology Research Unit, Department of Infectious Diseases, Section 8632, Copenhagen University Hospital, RigshospitaletViro-immunology Research Unit, Department of Infectious Diseases, Section 8632, Copenhagen University Hospital, RigshospitaletDepartment of Clinical Immunology, Section 2034, Copenhagen University Hospital, RigshospitaletDepartment of Clinical Immunology, Section 2034, Copenhagen University Hospital, RigshospitaletDepartment of Clinical Medicine, Faculty of Health and Medical Sciences, University of CopenhagenDepartment of Clinical Biochemistry, Copenhagen University Hospital, RigshospitaletThe Heart Center, Department of Cardiology, Copenhagen University Hospital, RigshospitaletViro-immunology Research Unit, Department of Infectious Diseases, Section 8632, Copenhagen University Hospital, RigshospitaletDepartment of Cardiology, Copenhagen University Hospital Herlev and GentofteLaboratory of Molecular Medicine, Department of Clinical Immunology, Section 7631, Copenhagen University Hospital, RigshospitaletAbstract The heterogeneity of the SARS-CoV-2 immune responses has become considerably more complex over time and diverse immune imprinting is observed in vaccinated individuals. Despite vaccination, following the emergence of the Omicron variant, some individuals appear more susceptible to primary infections and reinfections than others, underscoring the need to elucidate how immune responses are influenced by previous infections and vaccination. IgG, IgA, neutralizing antibodies and T-cell immune responses in 1,325 individuals (955 of which were infection-naive) were investigated before and after three doses of the BNT162b2 vaccine, examining their relation to breakthrough infections and immune imprinting in the context of Omicron. Our study shows that both humoral and cellular responses following vaccination were generally higher after SARS-CoV-2 infection compared to infection-naive. Notably, viral exposure before vaccination was crucial to achieving a robust IgA response. Individuals with lower IgG, IgA, and neutralizing antibody responses postvaccination had a significantly higher risk of reinfection and future Omicron infections. This was not observed for T-cell responses. A primary infection before Omicron and subsequent reinfection with Omicron dampened the humoral and cellular responses compared to a primary Omicron infection, consistent with immune imprinting. These results underscore the significant impact of hybrid immunity for immune responses in general, particularly for IgA responses even after revaccination, and the importance of robust humoral responses in preventing future infections.https://doi.org/10.1038/s41467-023-41342-2
spellingShingle Laura Pérez-Alós
Cecilie Bo Hansen
Jose Juan Almagro Armenteros
Johannes Roth Madsen
Line Dam Heftdal
Rasmus Bo Hasselbalch
Mia Marie Pries-Heje
Rafael Bayarri-Olmos
Ida Jarlhelt
Sebastian Rask Hamm
Dina Leth Møller
Erik Sørensen
Sisse Rye Ostrowski
Ruth Frikke-Schmidt
Linda Maria Hilsted
Henning Bundgaard
Susanne Dam Nielsen
Kasper Karmark Iversen
Peter Garred
Previous immunity shapes immune responses to SARS-CoV-2 booster vaccination and Omicron breakthrough infection risk
Nature Communications
title Previous immunity shapes immune responses to SARS-CoV-2 booster vaccination and Omicron breakthrough infection risk
title_full Previous immunity shapes immune responses to SARS-CoV-2 booster vaccination and Omicron breakthrough infection risk
title_fullStr Previous immunity shapes immune responses to SARS-CoV-2 booster vaccination and Omicron breakthrough infection risk
title_full_unstemmed Previous immunity shapes immune responses to SARS-CoV-2 booster vaccination and Omicron breakthrough infection risk
title_short Previous immunity shapes immune responses to SARS-CoV-2 booster vaccination and Omicron breakthrough infection risk
title_sort previous immunity shapes immune responses to sars cov 2 booster vaccination and omicron breakthrough infection risk
url https://doi.org/10.1038/s41467-023-41342-2
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