Assessing the Genomics Structure of Dorper and White Dorper Variants, and Dorper Populations in South Africa and Hungary
Dorper sheep was developed for meat production in arid and semi-arid regions under extensive production systems in South Africa. Two variants with distinct head and neck colors were bred during their development process. White Dorper have a white coat while Dorper have a black head and neck. Both va...
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MDPI AG
2023-02-01
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| Series: | Biology |
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| Online Access: | https://www.mdpi.com/2079-7737/12/3/386 |
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| author | George Wanjala Putri Kusuma Astuti Zoltán Bagi Nelly Kichamu Péter Strausz Szilvia Kusza |
| author_facet | George Wanjala Putri Kusuma Astuti Zoltán Bagi Nelly Kichamu Péter Strausz Szilvia Kusza |
| author_sort | George Wanjala |
| collection | DOAJ |
| description | Dorper sheep was developed for meat production in arid and semi-arid regions under extensive production systems in South Africa. Two variants with distinct head and neck colors were bred during their development process. White Dorper have a white coat while Dorper have a black head and neck. Both variants have grown in popularity around the world. Therefore, understanding the genomic architecture between South African Dorpers and Dorper populations adapted to other climatic regions, as well as genomic differences between Dorper and White Dorper variants is vital for their molecular management. Using the ovine 50K SNP chip, this study compared the genetic architecture of Dorper variants between populations from South Africa and Hungary. The Dorper populations in both countries had high genetic diversity levels, although Dorper in Hungary showed high levels of inbreeding. White Dorpers from both countries were genetically closely related, while Dorpers were distantly related according to principal component analysis and neighbor-joining tree. Additionally, whereas all groups displayed unique selection signatures for local adaptation, Dorpers from Hungary had a similar linkage disequilibrium decay. Environmental differences and color may have influenced the genetic differentiation between the Dorpers. For their molecular management and prospective genomic selection, it is crucial to understand the Dorper sheep’s genomic architecture, and the results of this study can be interpreted as a step in this direction. |
| first_indexed | 2024-03-11T06:54:16Z |
| format | Article |
| id | doaj.art-301baf179b494f3ba54827b83d3c9cdc |
| institution | Directory Open Access Journal |
| issn | 2079-7737 |
| language | English |
| last_indexed | 2024-03-11T06:54:16Z |
| publishDate | 2023-02-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Biology |
| spelling | doaj.art-301baf179b494f3ba54827b83d3c9cdc2023-11-17T09:41:28ZengMDPI AGBiology2079-77372023-02-0112338610.3390/biology12030386Assessing the Genomics Structure of Dorper and White Dorper Variants, and Dorper Populations in South Africa and HungaryGeorge Wanjala0Putri Kusuma Astuti1Zoltán Bagi2Nelly Kichamu3Péter Strausz4Szilvia Kusza5Centre for Agricultural Genomics and Biotechnology, Faculty of Agricultural and Food Sciences and Environmental Management, University of Debrecen, 4032 Debrecen, HungaryCentre for Agricultural Genomics and Biotechnology, Faculty of Agricultural and Food Sciences and Environmental Management, University of Debrecen, 4032 Debrecen, HungaryCentre for Agricultural Genomics and Biotechnology, Faculty of Agricultural and Food Sciences and Environmental Management, University of Debrecen, 4032 Debrecen, HungaryDoctoral School of Animal Science, University of Debrecen, 4032 Debrecen, HungaryInstitute of Strategy and Management, Corvinus University of Budapest, 1093 Budapest, HungaryCentre for Agricultural Genomics and Biotechnology, Faculty of Agricultural and Food Sciences and Environmental Management, University of Debrecen, 4032 Debrecen, HungaryDorper sheep was developed for meat production in arid and semi-arid regions under extensive production systems in South Africa. Two variants with distinct head and neck colors were bred during their development process. White Dorper have a white coat while Dorper have a black head and neck. Both variants have grown in popularity around the world. Therefore, understanding the genomic architecture between South African Dorpers and Dorper populations adapted to other climatic regions, as well as genomic differences between Dorper and White Dorper variants is vital for their molecular management. Using the ovine 50K SNP chip, this study compared the genetic architecture of Dorper variants between populations from South Africa and Hungary. The Dorper populations in both countries had high genetic diversity levels, although Dorper in Hungary showed high levels of inbreeding. White Dorpers from both countries were genetically closely related, while Dorpers were distantly related according to principal component analysis and neighbor-joining tree. Additionally, whereas all groups displayed unique selection signatures for local adaptation, Dorpers from Hungary had a similar linkage disequilibrium decay. Environmental differences and color may have influenced the genetic differentiation between the Dorpers. For their molecular management and prospective genomic selection, it is crucial to understand the Dorper sheep’s genomic architecture, and the results of this study can be interpreted as a step in this direction.https://www.mdpi.com/2079-7737/12/3/386adaptationdorpergenetic diversitylinkage disequilibriummanagement best practicespopulation structure |
| spellingShingle | George Wanjala Putri Kusuma Astuti Zoltán Bagi Nelly Kichamu Péter Strausz Szilvia Kusza Assessing the Genomics Structure of Dorper and White Dorper Variants, and Dorper Populations in South Africa and Hungary Biology adaptation dorper genetic diversity linkage disequilibrium management best practices population structure |
| title | Assessing the Genomics Structure of Dorper and White Dorper Variants, and Dorper Populations in South Africa and Hungary |
| title_full | Assessing the Genomics Structure of Dorper and White Dorper Variants, and Dorper Populations in South Africa and Hungary |
| title_fullStr | Assessing the Genomics Structure of Dorper and White Dorper Variants, and Dorper Populations in South Africa and Hungary |
| title_full_unstemmed | Assessing the Genomics Structure of Dorper and White Dorper Variants, and Dorper Populations in South Africa and Hungary |
| title_short | Assessing the Genomics Structure of Dorper and White Dorper Variants, and Dorper Populations in South Africa and Hungary |
| title_sort | assessing the genomics structure of dorper and white dorper variants and dorper populations in south africa and hungary |
| topic | adaptation dorper genetic diversity linkage disequilibrium management best practices population structure |
| url | https://www.mdpi.com/2079-7737/12/3/386 |
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