Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense
Rheum likiangense Samuelsson (Polygonaceae) is an endangered alpine rhubarb in the Qinghai-Tibet Plateau. In this study we report the complete chloroplast genome sequence (plastome) of Rh. likiangense. The assembled plastome is 162,291 bp in length with 31,741 bp inverted repeat (IR) regions and 128...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1832930 |
| _version_ | 1797639059572523008 |
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| author | Mingyu Liu Renping Xu |
| author_facet | Mingyu Liu Renping Xu |
| author_sort | Mingyu Liu |
| collection | DOAJ |
| description | Rheum likiangense Samuelsson (Polygonaceae) is an endangered alpine rhubarb in the Qinghai-Tibet Plateau. In this study we report the complete chloroplast genome sequence (plastome) of Rh. likiangense. The assembled plastome is 162,291 bp in length with 31,741 bp inverted repeat (IR) regions and 128 annotated genes, including 34 tRNA genes, 8 rRNA genes, and 86 protein-coding genes. Phylogenetic analyses based on the full plastome sequences suggest the close relationship of Rh. likiangense with Rh. acuminatum and Rh. nobile. The plastome reported here is highly useful for designing plastome SSR markers to conduct a further conservation genetic study of this endangered rhubarb. |
| first_indexed | 2024-03-11T13:11:24Z |
| format | Article |
| id | doaj.art-312e975fc97741a5ab6e3820ecfd0bd2 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:11:24Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-312e975fc97741a5ab6e3820ecfd0bd22023-11-03T14:08:16ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01533663366410.1080/23802359.2020.18329301832930Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangenseMingyu Liu0Renping Xu1College of Basic Education, National University of Defense TechnologyState Key Laboratory of Grassland Agro-Ecosystem, Institute of Innovation Ecology, Lanzhou UniversityRheum likiangense Samuelsson (Polygonaceae) is an endangered alpine rhubarb in the Qinghai-Tibet Plateau. In this study we report the complete chloroplast genome sequence (plastome) of Rh. likiangense. The assembled plastome is 162,291 bp in length with 31,741 bp inverted repeat (IR) regions and 128 annotated genes, including 34 tRNA genes, 8 rRNA genes, and 86 protein-coding genes. Phylogenetic analyses based on the full plastome sequences suggest the close relationship of Rh. likiangense with Rh. acuminatum and Rh. nobile. The plastome reported here is highly useful for designing plastome SSR markers to conduct a further conservation genetic study of this endangered rhubarb.http://dx.doi.org/10.1080/23802359.2020.1832930endangeredphylogenetic analysesgene annotationinverted repeats |
| spellingShingle | Mingyu Liu Renping Xu Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense Mitochondrial DNA. Part B. Resources endangered phylogenetic analyses gene annotation inverted repeats |
| title | Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense |
| title_full | Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense |
| title_fullStr | Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense |
| title_full_unstemmed | Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense |
| title_short | Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense |
| title_sort | complete chloroplast genome sequence of an alpine rhubarb rheum likiangense |
| topic | endangered phylogenetic analyses gene annotation inverted repeats |
| url | http://dx.doi.org/10.1080/23802359.2020.1832930 |
| work_keys_str_mv | AT mingyuliu completechloroplastgenomesequenceofanalpinerhubarbrheumlikiangense AT renpingxu completechloroplastgenomesequenceofanalpinerhubarbrheumlikiangense |