Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodes
We contribute transcriptomic data for two species of Ostracoda, an early-diverged group of small-sized pancrustaceans. Data include new reference transcriptomes for two asexual non-marine species (Dolerocypris sinensis and Heterocypris aff. salina), as well as single-specimen transcriptomic data tha...
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| Format: | Article |
| Language: | English |
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Elsevier
2024-04-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S235234092400043X |
| _version_ | 1827313717163851776 |
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| author | Miguel Vences Sten Anslan Joana Sabino-Pinto Mauricio Bonilla-Flores Paula Echeverría-Galindo Uwe John Benneth Nass Liseth Pérez Michaela Preick Liping Zhu Antje Schwalb |
| author_facet | Miguel Vences Sten Anslan Joana Sabino-Pinto Mauricio Bonilla-Flores Paula Echeverría-Galindo Uwe John Benneth Nass Liseth Pérez Michaela Preick Liping Zhu Antje Schwalb |
| author_sort | Miguel Vences |
| collection | DOAJ |
| description | We contribute transcriptomic data for two species of Ostracoda, an early-diverged group of small-sized pancrustaceans. Data include new reference transcriptomes for two asexual non-marine species (Dolerocypris sinensis and Heterocypris aff. salina), as well as single-specimen transcriptomic data that served to analyse gene expression across four developmental stages in D. sinensis. Data are evaluated by computing gene expression profiles of the different developmental stages which consistently placed eggs and small larvae (at the stage of instar A-8) similar to each other, and apart from adults which were distinct from all other developmental stages but closest to large larvae (instar A-4). We further evaluated the transcriptomic data with two newly sequenced low-coverage genomes of the target species. The new data thus document the feasibility of obtaining reliable transcriptomic data from single specimens – even eggs – of these small metazoans. |
| first_indexed | 2024-03-08T11:25:33Z |
| format | Article |
| id | doaj.art-313e2714042d492e9a2fc11da450cf3c |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-24T22:19:59Z |
| publishDate | 2024-04-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-313e2714042d492e9a2fc11da450cf3c2024-03-20T06:09:35ZengElsevierData in Brief2352-34092024-04-0153110070Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodesMiguel Vences0Sten Anslan1Joana Sabino-Pinto2Mauricio Bonilla-Flores3Paula Echeverría-Galindo4Uwe John5Benneth Nass6Liseth Pérez7Michaela Preick8Liping Zhu9Antje Schwalb10Zoological Institute, Technische Universität Braunschweig, Mendelssohnstr. 4, 38106 Braunschweig, Germany; Corresponding author.Institute of Ecology and Earth Sciences, University of Tartu, Juhan Liivi 2, 50409 Tartu, Estonia; Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, FinlandGroningen Institute for Evolutionary Life Sciences, University of Groningen, Nijenborgh 7, 9747 AG Groningen, the NetherlandsInstitute of Geosystems and Bioindication, Technische Universität Braunschweig, Langer Kamp 19c, 38106 Braunschweig, GermanyInstitute of Geosystems and Bioindication, Technische Universität Braunschweig, Langer Kamp 19c, 38106 Braunschweig, GermanyAlfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Am Handelshafen 12, 27570 Bremerhaven, GermanyZoological Institute, Technische Universität Braunschweig, Mendelssohnstr. 4, 38106 Braunschweig, GermanyInstitute of Geosystems and Bioindication, Technische Universität Braunschweig, Langer Kamp 19c, 38106 Braunschweig, GermanyFaculty of Mathematics and Natural Sciences, Institute for Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Str. 24-25, 14476 Potsdam, GermanyInstitute of Tibetan Plateau Research, Chinese Academy of Sciences, 16 Lincui Road, Beijing 100101, ChinaInstitute of Geosystems and Bioindication, Technische Universität Braunschweig, Langer Kamp 19c, 38106 Braunschweig, GermanyWe contribute transcriptomic data for two species of Ostracoda, an early-diverged group of small-sized pancrustaceans. Data include new reference transcriptomes for two asexual non-marine species (Dolerocypris sinensis and Heterocypris aff. salina), as well as single-specimen transcriptomic data that served to analyse gene expression across four developmental stages in D. sinensis. Data are evaluated by computing gene expression profiles of the different developmental stages which consistently placed eggs and small larvae (at the stage of instar A-8) similar to each other, and apart from adults which were distinct from all other developmental stages but closest to large larvae (instar A-4). We further evaluated the transcriptomic data with two newly sequenced low-coverage genomes of the target species. The new data thus document the feasibility of obtaining reliable transcriptomic data from single specimens – even eggs – of these small metazoans.http://www.sciencedirect.com/science/article/pii/S235234092400043XOstracodaDolerocyprisHeterocyprisTranscriptomicsPhylogenomics |
| spellingShingle | Miguel Vences Sten Anslan Joana Sabino-Pinto Mauricio Bonilla-Flores Paula Echeverría-Galindo Uwe John Benneth Nass Liseth Pérez Michaela Preick Liping Zhu Antje Schwalb Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodes Data in Brief Ostracoda Dolerocypris Heterocypris Transcriptomics Phylogenomics |
| title | Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodes |
| title_full | Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodes |
| title_fullStr | Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodes |
| title_full_unstemmed | Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodes |
| title_short | Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodes |
| title_sort | dataset from rnaseq analysis of differential gene expression among developmental stages of two non marine ostracodes |
| topic | Ostracoda Dolerocypris Heterocypris Transcriptomics Phylogenomics |
| url | http://www.sciencedirect.com/science/article/pii/S235234092400043X |
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