The complete chloroplast genome of Paphiopedilum tranlimianum (Orchidaceae)
Chloroplast (cp) genome sequences have become a useful tool for phylogeneitc and evolutionary study in recent reports. Here the complete chloroplast genome of the Paphiopedilum tranlimianum has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 162,127 bp in si...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1483779 |
| _version_ | 1797640671083888640 |
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| author | Changhai Sui Shuying Liu Huimin Liu Hongzhang Liu |
| author_facet | Changhai Sui Shuying Liu Huimin Liu Hongzhang Liu |
| author_sort | Changhai Sui |
| collection | DOAJ |
| description | Chloroplast (cp) genome sequences have become a useful tool for phylogeneitc and evolutionary study in recent reports. Here the complete chloroplast genome of the Paphiopedilum tranlimianum has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 162,127 bp in size, and comprises of a pair of inverted repeat (IR) regions of 31,457 bp each, a large single-copy (LSC) region of 91,711 bp, and a small single-copy (SSC) region of 7,502 bp. The total GC content is 35.4%, while the corresponding values of the LSC, SSC, and IR regions are 32.7%, 26.9%, and 40.9%, respectively. The chloroplast genome contains 133 genes, including 87 protein-coding genes, eight ribosomal RNA genes, and 38 transfer RNA genes. Three genes (ndhA, ndhE, and ndhI) are pseudogenized or lost in its cpDNA. The Maximum-Likelihood phylogenetic analysis showed a close relationship with P. niveum in Orchidaceae. Our findings provide useful information for phylogenetic and evolutionary research of Paphiopedilum species. |
| first_indexed | 2024-03-11T13:34:10Z |
| format | Article |
| id | doaj.art-31aa4bad49ea42fb901f1c233b624bf9 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:10Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-31aa4bad49ea42fb901f1c233b624bf92023-11-02T15:57:24ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-013282082210.1080/23802359.2018.14837791483779The complete chloroplast genome of Paphiopedilum tranlimianum (Orchidaceae)Changhai Sui0Shuying Liu1Huimin Liu2Hongzhang Liu3Jilin Agricultural UniversityJilin Agricultural UniversityJilin Agricultural UniversityJilin Agricultural UniversityChloroplast (cp) genome sequences have become a useful tool for phylogeneitc and evolutionary study in recent reports. Here the complete chloroplast genome of the Paphiopedilum tranlimianum has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 162,127 bp in size, and comprises of a pair of inverted repeat (IR) regions of 31,457 bp each, a large single-copy (LSC) region of 91,711 bp, and a small single-copy (SSC) region of 7,502 bp. The total GC content is 35.4%, while the corresponding values of the LSC, SSC, and IR regions are 32.7%, 26.9%, and 40.9%, respectively. The chloroplast genome contains 133 genes, including 87 protein-coding genes, eight ribosomal RNA genes, and 38 transfer RNA genes. Three genes (ndhA, ndhE, and ndhI) are pseudogenized or lost in its cpDNA. The Maximum-Likelihood phylogenetic analysis showed a close relationship with P. niveum in Orchidaceae. Our findings provide useful information for phylogenetic and evolutionary research of Paphiopedilum species.http://dx.doi.org/10.1080/23802359.2018.1483779paphiopedilum tranlimianumillumina sequencingchloroplast genomemitobim |
| spellingShingle | Changhai Sui Shuying Liu Huimin Liu Hongzhang Liu The complete chloroplast genome of Paphiopedilum tranlimianum (Orchidaceae) Mitochondrial DNA. Part B. Resources paphiopedilum tranlimianum illumina sequencing chloroplast genome mitobim |
| title | The complete chloroplast genome of Paphiopedilum tranlimianum (Orchidaceae) |
| title_full | The complete chloroplast genome of Paphiopedilum tranlimianum (Orchidaceae) |
| title_fullStr | The complete chloroplast genome of Paphiopedilum tranlimianum (Orchidaceae) |
| title_full_unstemmed | The complete chloroplast genome of Paphiopedilum tranlimianum (Orchidaceae) |
| title_short | The complete chloroplast genome of Paphiopedilum tranlimianum (Orchidaceae) |
| title_sort | complete chloroplast genome of paphiopedilum tranlimianum orchidaceae |
| topic | paphiopedilum tranlimianum illumina sequencing chloroplast genome mitobim |
| url | http://dx.doi.org/10.1080/23802359.2018.1483779 |
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