The <i>CDPK</i> Gene Family in Mustard (<i>Brassica juncea</i> L.): Genome-Wide Identification and Expression Analysis under Cold Stress
The <i>CDPK</i> family genes play crucial roles in signal transduction pathways during plant development and stress response. In this study, we comprehensively analyzed the <i>CDPK</i> family genes in mustard (<i>Brassica juncea</i> L.), resulting in the identific...
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| Natura: | Articolo |
| Lingua: | English |
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MDPI AG
2023-12-01
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| Serie: | Horticulturae |
| Soggetti: | |
| Accesso online: | https://www.mdpi.com/2311-7524/10/1/20 |
| _version_ | 1827371944446525440 |
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| author | Haibo Li Hao Wu Weifeng Huang Jiaxian Liu Jiaxin Deng Chuanhong Li Cui Mao Yang Zhang Yukun Wang Jie Zheng |
| author_facet | Haibo Li Hao Wu Weifeng Huang Jiaxian Liu Jiaxin Deng Chuanhong Li Cui Mao Yang Zhang Yukun Wang Jie Zheng |
| author_sort | Haibo Li |
| collection | DOAJ |
| description | The <i>CDPK</i> family genes play crucial roles in signal transduction pathways during plant development and stress response. In this study, we comprehensively analyzed the <i>CDPK</i> family genes in mustard (<i>Brassica juncea</i> L.), resulting in the identification of 101 genes (<i>BjuCDPK1</i>–<i>101</i>) located on chromosomes AA_Chr01 to BB_Chr08. RNA-seq analysis showed that most <i>BjuCDPK</i> genes were predominantly expressed in the root and flower bud, suggesting their organ-specific expression patterns. Furthermore, the expression levels of most <i>BjuCDPK</i> genes were significantly altered by cold stress. The promoter regions of <i>BjuCDPK</i> genes had abundant cis-acting elements related to hormones and stress. The interaction network analysis predicted that BjuCDPK proteins respond to abiotic stress probably via interaction with ABF1, ABF4, and/or DI19. Our findings provide valuable information for further the investigation of the cold stress adaption of mustard via the CDPK signaling pathway. |
| first_indexed | 2024-03-08T10:49:04Z |
| format | Article |
| id | doaj.art-320a77cd059b4c16adc54ea6c1fa7be4 |
| institution | Directory Open Access Journal |
| issn | 2311-7524 |
| language | English |
| last_indexed | 2024-03-08T10:49:04Z |
| publishDate | 2023-12-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Horticulturae |
| spelling | doaj.art-320a77cd059b4c16adc54ea6c1fa7be42024-01-26T16:49:40ZengMDPI AGHorticulturae2311-75242023-12-011012010.3390/horticulturae10010020The <i>CDPK</i> Gene Family in Mustard (<i>Brassica juncea</i> L.): Genome-Wide Identification and Expression Analysis under Cold StressHaibo Li0Hao Wu1Weifeng Huang2Jiaxian Liu3Jiaxin Deng4Chuanhong Li5Cui Mao6Yang Zhang7Yukun Wang8Jie Zheng9Guangdong Provincial Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northern Region, Shaoguan University, Shaoguan 512000, ChinaGuangdong Provincial Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northern Region, Shaoguan University, Shaoguan 512000, ChinaSchool of Biology and Agriculture, Shaoguan University, Shaoguan 512000, ChinaSchool of Biology and Agriculture, Shaoguan University, Shaoguan 512000, ChinaSchool of Biology and Agriculture, Shaoguan University, Shaoguan 512000, ChinaSchool of Biology and Agriculture, Shaoguan University, Shaoguan 512000, ChinaSchool of Biology and Agriculture, Shaoguan University, Shaoguan 512000, ChinaGuangdong Provincial Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northern Region, Shaoguan University, Shaoguan 512000, ChinaGuangdong Provincial Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northern Region, Shaoguan University, Shaoguan 512000, ChinaGuangdong Provincial Key Laboratory of Utilization and Conservation of Food and Medicinal Resources in Northern Region, Shaoguan University, Shaoguan 512000, ChinaThe <i>CDPK</i> family genes play crucial roles in signal transduction pathways during plant development and stress response. In this study, we comprehensively analyzed the <i>CDPK</i> family genes in mustard (<i>Brassica juncea</i> L.), resulting in the identification of 101 genes (<i>BjuCDPK1</i>–<i>101</i>) located on chromosomes AA_Chr01 to BB_Chr08. RNA-seq analysis showed that most <i>BjuCDPK</i> genes were predominantly expressed in the root and flower bud, suggesting their organ-specific expression patterns. Furthermore, the expression levels of most <i>BjuCDPK</i> genes were significantly altered by cold stress. The promoter regions of <i>BjuCDPK</i> genes had abundant cis-acting elements related to hormones and stress. The interaction network analysis predicted that BjuCDPK proteins respond to abiotic stress probably via interaction with ABF1, ABF4, and/or DI19. Our findings provide valuable information for further the investigation of the cold stress adaption of mustard via the CDPK signaling pathway.https://www.mdpi.com/2311-7524/10/1/20mustard (<i>Brassica juncea</i> L.)<i>CDPK</i> gene familygene expressioncold stress |
| spellingShingle | Haibo Li Hao Wu Weifeng Huang Jiaxian Liu Jiaxin Deng Chuanhong Li Cui Mao Yang Zhang Yukun Wang Jie Zheng The <i>CDPK</i> Gene Family in Mustard (<i>Brassica juncea</i> L.): Genome-Wide Identification and Expression Analysis under Cold Stress Horticulturae mustard (<i>Brassica juncea</i> L.) <i>CDPK</i> gene family gene expression cold stress |
| title | The <i>CDPK</i> Gene Family in Mustard (<i>Brassica juncea</i> L.): Genome-Wide Identification and Expression Analysis under Cold Stress |
| title_full | The <i>CDPK</i> Gene Family in Mustard (<i>Brassica juncea</i> L.): Genome-Wide Identification and Expression Analysis under Cold Stress |
| title_fullStr | The <i>CDPK</i> Gene Family in Mustard (<i>Brassica juncea</i> L.): Genome-Wide Identification and Expression Analysis under Cold Stress |
| title_full_unstemmed | The <i>CDPK</i> Gene Family in Mustard (<i>Brassica juncea</i> L.): Genome-Wide Identification and Expression Analysis under Cold Stress |
| title_short | The <i>CDPK</i> Gene Family in Mustard (<i>Brassica juncea</i> L.): Genome-Wide Identification and Expression Analysis under Cold Stress |
| title_sort | i cdpk i gene family in mustard i brassica juncea i l genome wide identification and expression analysis under cold stress |
| topic | mustard (<i>Brassica juncea</i> L.) <i>CDPK</i> gene family gene expression cold stress |
| url | https://www.mdpi.com/2311-7524/10/1/20 |
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