The complete chloroplast genome of Dendrobium comatum (Orchidaceae)
Dendrobium comatum is a rare orchid plant. To further its research and conservation, we reported and characterized its complete chloroplast (cp) genome by using Illumina paired-end sequencing data. We also analyzed its characteristics and studied its clustering relationships. The total chloroplast g...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-11-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1990152 |
| _version_ | 1797638693758959616 |
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| author | Feng Liu Xu Xiao Mingtai An Zhi Li |
| author_facet | Feng Liu Xu Xiao Mingtai An Zhi Li |
| author_sort | Feng Liu |
| collection | DOAJ |
| description | Dendrobium comatum is a rare orchid plant. To further its research and conservation, we reported and characterized its complete chloroplast (cp) genome by using Illumina paired-end sequencing data. We also analyzed its characteristics and studied its clustering relationships. The total chloroplast genome size was 158,008 bp, including inverted repeats (IRs) of 27,032 bp separated by a large single copy (LSC) region and a small single copy (SSC) region of 85,592 and 18,352 bp, respectively. A total of 132 genes, including 38 tRNA, 8 rRNA, and 87 protein-coding genes, were identified. Phylogenetic analysis showed that D. comatum is sister to D. kingianum with sufficient support. |
| first_indexed | 2024-03-11T13:07:16Z |
| format | Article |
| id | doaj.art-3225954cf705497e843a45df04433db1 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:07:16Z |
| publishDate | 2021-11-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-3225954cf705497e843a45df04433db12023-11-03T14:28:32ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-11-016113229323010.1080/23802359.2021.19901521990152The complete chloroplast genome of Dendrobium comatum (Orchidaceae)Feng Liu0Xu Xiao1Mingtai An2Zhi Li3College of Forestry, Guizhou UniversityCollege of Forestry, Guizhou UniversityCollege of Forestry, Guizhou UniversityCollege of Forestry, Guizhou UniversityDendrobium comatum is a rare orchid plant. To further its research and conservation, we reported and characterized its complete chloroplast (cp) genome by using Illumina paired-end sequencing data. We also analyzed its characteristics and studied its clustering relationships. The total chloroplast genome size was 158,008 bp, including inverted repeats (IRs) of 27,032 bp separated by a large single copy (LSC) region and a small single copy (SSC) region of 85,592 and 18,352 bp, respectively. A total of 132 genes, including 38 tRNA, 8 rRNA, and 87 protein-coding genes, were identified. Phylogenetic analysis showed that D. comatum is sister to D. kingianum with sufficient support.http://dx.doi.org/10.1080/23802359.2021.1990152dendrobium comatumchloroplast genomehigh-throughput sequencingphylogenomic analysis |
| spellingShingle | Feng Liu Xu Xiao Mingtai An Zhi Li The complete chloroplast genome of Dendrobium comatum (Orchidaceae) Mitochondrial DNA. Part B. Resources dendrobium comatum chloroplast genome high-throughput sequencing phylogenomic analysis |
| title | The complete chloroplast genome of Dendrobium comatum (Orchidaceae) |
| title_full | The complete chloroplast genome of Dendrobium comatum (Orchidaceae) |
| title_fullStr | The complete chloroplast genome of Dendrobium comatum (Orchidaceae) |
| title_full_unstemmed | The complete chloroplast genome of Dendrobium comatum (Orchidaceae) |
| title_short | The complete chloroplast genome of Dendrobium comatum (Orchidaceae) |
| title_sort | complete chloroplast genome of dendrobium comatum orchidaceae |
| topic | dendrobium comatum chloroplast genome high-throughput sequencing phylogenomic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.1990152 |
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