The complete chloroplast genome of monotypic fern, Mesopteris tonkinensis (Thelypteridaceae)
Mesopteris tonkinensis is monotypic species in the genus Mesopteris (Thelypteridaceae). We characterized its complete chloroplast genome sequences by Illumina sequencing and de novo assembly. The genome size is 161,380 bp in length with a GC content of 43.6%, containing a large single-copy (LSC) reg...
| Main Authors: | , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2018-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1502632 |
| _version_ | 1797640596129579008 |
|---|---|
| author | Zhe Ding Tianjian Chen Shanshan Liu Shufeng Li Zhen Wang Ting Wang Yingjuan Su |
| author_facet | Zhe Ding Tianjian Chen Shanshan Liu Shufeng Li Zhen Wang Ting Wang Yingjuan Su |
| author_sort | Zhe Ding |
| collection | DOAJ |
| description | Mesopteris tonkinensis is monotypic species in the genus Mesopteris (Thelypteridaceae). We characterized its complete chloroplast genome sequences by Illumina sequencing and de novo assembly. The genome size is 161,380 bp in length with a GC content of 43.6%, containing a large single-copy (LSC) region of 82,678 bp, a small single-copy (SSC) region of 21,786 bp and a pair of inverted repeat (IR) of 28,458 bp. In total, 131 genes are identified, including 88 protein-coding genes, 34 tRNA genes with absent trnV-UAC, eight rRNA genes and one pseudogene. ML tree revealed that M. tonkinensis and Christella appendiculata were closely related. |
| first_indexed | 2024-03-11T13:34:10Z |
| format | Article |
| id | doaj.art-322cabcda1ee4137a0febea9134f8c88 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:10Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-322cabcda1ee4137a0febea9134f8c882023-11-02T15:57:25ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-013286886910.1080/23802359.2018.15026321502632The complete chloroplast genome of monotypic fern, Mesopteris tonkinensis (Thelypteridaceae)Zhe Ding0Tianjian Chen1Shanshan Liu2Shufeng Li3Zhen Wang4Ting Wang5Yingjuan Su6Sun Yat-sen UniversitySun Yat-sen UniversitySun Yat-sen UniversitySun Yat-sen UniversityNanjing Agricultural UniversitySouth China Agricultural UniversitySun Yat-sen UniversityMesopteris tonkinensis is monotypic species in the genus Mesopteris (Thelypteridaceae). We characterized its complete chloroplast genome sequences by Illumina sequencing and de novo assembly. The genome size is 161,380 bp in length with a GC content of 43.6%, containing a large single-copy (LSC) region of 82,678 bp, a small single-copy (SSC) region of 21,786 bp and a pair of inverted repeat (IR) of 28,458 bp. In total, 131 genes are identified, including 88 protein-coding genes, 34 tRNA genes with absent trnV-UAC, eight rRNA genes and one pseudogene. ML tree revealed that M. tonkinensis and Christella appendiculata were closely related.http://dx.doi.org/10.1080/23802359.2018.1502632mesopteris tonkinensismonotypic fernchloroplast genomephylogenetic analysis |
| spellingShingle | Zhe Ding Tianjian Chen Shanshan Liu Shufeng Li Zhen Wang Ting Wang Yingjuan Su The complete chloroplast genome of monotypic fern, Mesopteris tonkinensis (Thelypteridaceae) Mitochondrial DNA. Part B. Resources mesopteris tonkinensis monotypic fern chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome of monotypic fern, Mesopteris tonkinensis (Thelypteridaceae) |
| title_full | The complete chloroplast genome of monotypic fern, Mesopteris tonkinensis (Thelypteridaceae) |
| title_fullStr | The complete chloroplast genome of monotypic fern, Mesopteris tonkinensis (Thelypteridaceae) |
| title_full_unstemmed | The complete chloroplast genome of monotypic fern, Mesopteris tonkinensis (Thelypteridaceae) |
| title_short | The complete chloroplast genome of monotypic fern, Mesopteris tonkinensis (Thelypteridaceae) |
| title_sort | complete chloroplast genome of monotypic fern mesopteris tonkinensis thelypteridaceae |
| topic | mesopteris tonkinensis monotypic fern chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2018.1502632 |
| work_keys_str_mv | AT zheding thecompletechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae AT tianjianchen thecompletechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae AT shanshanliu thecompletechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae AT shufengli thecompletechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae AT zhenwang thecompletechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae AT tingwang thecompletechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae AT yingjuansu thecompletechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae AT zheding completechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae AT tianjianchen completechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae AT shanshanliu completechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae AT shufengli completechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae AT zhenwang completechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae AT tingwang completechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae AT yingjuansu completechloroplastgenomeofmonotypicfernmesopteristonkinensisthelypteridaceae |