High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectives
Abstract High-throughput sequencing (HTS) has instigated a paradigm shift in plant pathology, showcasing its transformative role in the management of plant diseases. As a powerful tool, HTS aids in identifying pathogens and enhances disease management strategies by detecting novel and emerging patho...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
| Published: |
BMC
2023-09-01
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| Series: | Phytopathology Research |
| Subjects: | |
| Online Access: | https://doi.org/10.1186/s42483-023-00199-5 |
| _version_ | 1827724248735547392 |
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| author | Mir Muhammad Nizamani Qian Zhang Ghulam Muhae-Ud-Din Yong Wang |
| author_facet | Mir Muhammad Nizamani Qian Zhang Ghulam Muhae-Ud-Din Yong Wang |
| author_sort | Mir Muhammad Nizamani |
| collection | DOAJ |
| description | Abstract High-throughput sequencing (HTS) has instigated a paradigm shift in plant pathology, showcasing its transformative role in the management of plant diseases. As a powerful tool, HTS aids in identifying pathogens and enhances disease management strategies by detecting novel and emerging pathogens, tracking disease outbreaks, and contributing to developing disease-resistant cultivars. Despite these benefits, the implementation of HTS faces obstacles due to the complexity of data interpretation and economic factors that affect its widespread adoption. This comprehensive review summarizes the strengths, limitations, and opportunities associated with using HTS in managing plant diseases. The article also delves into the prospects of HTS, incorporating technological advancements, synergy with complementary methodologies, capacity-building initiatives, and the development of best practices and guidelines. By acknowledging and addressing these obstacles while harnessing the full capabilities of HTS, we advocate for a refined approach to managing plant diseases. This approach is critical for ensuring global food security, especially in the context of a growing global population and climate change. |
| first_indexed | 2024-03-10T22:13:06Z |
| format | Article |
| id | doaj.art-3235b908f4cf4cd98c865947071fc465 |
| institution | Directory Open Access Journal |
| issn | 2524-4167 |
| language | English |
| last_indexed | 2024-03-10T22:13:06Z |
| publishDate | 2023-09-01 |
| publisher | BMC |
| record_format | Article |
| series | Phytopathology Research |
| spelling | doaj.art-3235b908f4cf4cd98c865947071fc4652023-11-19T12:32:07ZengBMCPhytopathology Research2524-41672023-09-015111710.1186/s42483-023-00199-5High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectivesMir Muhammad Nizamani0Qian Zhang1Ghulam Muhae-Ud-Din2Yong Wang3Department of Plant Pathology, College of Agriculture, Guizhou UniversityDepartment of Plant Pathology, College of Agriculture, Guizhou UniversityDepartment of Plant Pathology, College of Agriculture, Guizhou UniversityDepartment of Plant Pathology, College of Agriculture, Guizhou UniversityAbstract High-throughput sequencing (HTS) has instigated a paradigm shift in plant pathology, showcasing its transformative role in the management of plant diseases. As a powerful tool, HTS aids in identifying pathogens and enhances disease management strategies by detecting novel and emerging pathogens, tracking disease outbreaks, and contributing to developing disease-resistant cultivars. Despite these benefits, the implementation of HTS faces obstacles due to the complexity of data interpretation and economic factors that affect its widespread adoption. This comprehensive review summarizes the strengths, limitations, and opportunities associated with using HTS in managing plant diseases. The article also delves into the prospects of HTS, incorporating technological advancements, synergy with complementary methodologies, capacity-building initiatives, and the development of best practices and guidelines. By acknowledging and addressing these obstacles while harnessing the full capabilities of HTS, we advocate for a refined approach to managing plant diseases. This approach is critical for ensuring global food security, especially in the context of a growing global population and climate change.https://doi.org/10.1186/s42483-023-00199-5Pathogen detectionDisease outbreaksEmerging pathogensGlobal food securityNovel pathogens |
| spellingShingle | Mir Muhammad Nizamani Qian Zhang Ghulam Muhae-Ud-Din Yong Wang High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectives Phytopathology Research Pathogen detection Disease outbreaks Emerging pathogens Global food security Novel pathogens |
| title | High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectives |
| title_full | High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectives |
| title_fullStr | High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectives |
| title_full_unstemmed | High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectives |
| title_short | High-throughput sequencing in plant disease management: a comprehensive review of benefits, challenges, and future perspectives |
| title_sort | high throughput sequencing in plant disease management a comprehensive review of benefits challenges and future perspectives |
| topic | Pathogen detection Disease outbreaks Emerging pathogens Global food security Novel pathogens |
| url | https://doi.org/10.1186/s42483-023-00199-5 |
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