Extrachromosomal circular DNA and structural variants highlight genome instability in Arabidopsis epigenetic mutants

Extrachromosomal circular DNA and structural variants highlight genome instability in Arabidopsis epigenetic mutants

Abstract Abundant extrachromosomal circular DNA (eccDNA) is associated with transposable element (TE) activity. However, how the eccDNA compartment is controlled by epigenetic regulations and what is its impact on the genome is understudied. Here, using long reads, we sequence both the eccDNA compar...

Full description

Bibliographic Details
Main Authors:	Panpan Zhang, Assane Mbodj, Abirami Soundiramourtty, Christel Llauro, Alain Ghesquière, Mathieu Ingouff, R. Keith Slotkin, Frédéric Pontvianne, Marco Catoni, Marie Mirouze
Format:	Article
Language:	English
Published:	Nature Portfolio 2023-08-01
Series:	Nature Communications
Online Access:	https://doi.org/10.1038/s41467-023-41023-0

Similar Items

ecc_finder: A Robust and Accurate Tool for Detecting Extrachromosomal Circular DNA From Sequencing Data
by: Panpan Zhang, et al.
Published: (2021-12-01)

Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants.
by: Sophie Lanciano, et al.
Published: (2017-02-01)

Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology
by: Emilie Debladis, et al.
Published: (2017-07-01)

45S rDNA Diversity <i>In Natura</i> as One Step towards Ribosomal Heterogeneity in <i>Arabidopsis thaliana</i>
by: Valérie Delorme-Hinoux, et al.
Published: (2023-07-01)

ANCHOR: A Technical Approach to Monitor Single-Copy Locus Localization in Planta
by: Anis Meschichi, et al.
Published: (2021-07-01)

Epigenetic Repeat-Induced Gene Silencing in the Chromosomal and Extrachromosomal Contexts in Human Cells.
by: Sho-Hei Mitsuda, et al.
Published: (2016-01-01)

Composition and Structure of <i>Arabidopsis thaliana</i> Extrachromosomal Circular DNAs Revealed by Nanopore Sequencing
by: Pavel Merkulov, et al.
Published: (2023-05-01)

Epigenetic remodeling of meiotic crossover frequency in Arabidopsis thaliana DNA methyltransferase mutants.
by: Nataliya E Yelina, et al.
Published: (2012-01-01)

Genome-wide analysis of horizontal transfer in non-model wild species from a natural ecosystem reveals new insights into genetic exchange in plants.
by: Emilie Aubin, et al.
Published: (2023-10-01)

Long distance signalling and epigenetic changes in crop grafting
by: Katie Jeynes-Cupper, et al.
Published: (2023-03-01)

Retinoblastoma and its binding partner MSI1 control imprinting in Arabidopsis.
by: Pauline E Jullien, et al.
Published: (2008-08-01)

Extrachromosomal DNA : New Players in Oncology
by: Ruby Dhar, et al.
Published: (2024-10-01)

Isolation of Extrachromosomal Elements by Histone Immunoprecipitation
by: T.I. Kuschak, et al.
Published: (2001-05-01)

Dynamics of extrachromosomal circular DNA in rice
by: Jundong Zhuang, et al.
Published: (2024-03-01)

Extrachromosomal nucleic acids in bovine babesia
by: Isidro Hotzel, et al.
Published: (1992-01-01)

Amplification of Extrachromosomal Oncogene and Tumorigenesis and Development
by: Yutong WANG, et al.
Published: (2020-12-01)

Amplification and Quantitation of Telomeric Extrachromosomal Circles
by: Nathaniel Robinson, et al.
Published: (2023-03-01)

Editorial: Plant epigenetics and chromatin dynamics - EPIPLANT 2021-2022
by: Guillaume Moissiard, et al.
Published: (2023-11-01)

Chromosomal and Extrachromosomal Instability of the cyclin D2 Gene is Induced by Myc Overexpression
by: Sabine Mai, et al.
Published: (1999-08-01)

Conjugation of extrachromosomal replicons of Rhodococcus erythropolis AN12
by: Yang, Joyce Chun-Yi
Published: (2006)

High capacity extrachromosomal gene expression vectors.
by: Hibbitt, O, et al.
Published: (2011)

Extrachromosomal circular DNA and their roles in cancer progression
by: Siqi Zheng, et al.
Published: (2025-01-01)

Examining the cooperation between extrachromosomal DNA circles
by: Jiahui Zhang, et al.
Published: (2022-12-01)

Extrachromosomal DNA in Genome (in)Stability – Role of Telomeres
by: Lucia Nanić, et al.
Published: (2016-06-01)

The eco-evolutionary dynamics of extrachromosomal elements in environmental vibrio
by: Xue, Hong, Ph. D. Massachusetts Institute of Technology
Published: (2015)

Developing extrachromosomal gene expression vector technologies: an overview.
by: Wade-Martins, R
Published: (2011)

Extrachromosomal circular DNA: enlightenment to widespread clinical application
by: Shun Wang, et al.
Published: (2025-02-01)

Comparative analysis of methodologies for detecting extrachromosomal circular DNA
by: Xuyuan Gao, et al.
Published: (2024-10-01)

Categorizing Extrachromosomal Circular DNA as Biomarkers in Serum of Cancer
by: Enze Deng, et al.
Published: (2024-04-01)

Variation of extrachromosomal circular DNA in cancer cell lines
by: Carl Rung dos Santos, et al.
Published: (2023-01-01)

Distribution and characterization of extrachromosomal circular DNA in colorectal cancer
by: Zhehang Chen, et al.
Published: (2022-12-01)

Extrachromosomal circular DNA: Current status and future prospects
by: Yiheng Zhao, et al.
Published: (2022-10-01)

Extrachromosomal circular DNA: biogenesis, structure, functions and diseases
by: Ludi Yang, et al.
Published: (2022-10-01)

Extrachromosomal Circular DNA: A New Target in Cancer
by: Pan Wu, et al.
Published: (2022-04-01)

Effects of nucleases on cell-free extrachromosomal circular DNA
by: Sarah T.K. Sin, et al.
Published: (2022-04-01)

Extrachromosomal Circular DNA: Category, Biogenesis, Recognition, and Functions
by: Xiukai Cao, et al.
Published: (2021-09-01)

Contribution of epigenetic variation to adaptation in Arabidopsis
by: Schmid, MW, et al.
Published: (2018)

Epigenetic natural variation in Arabidopsis thaliana.
by: Matthew W Vaughn, et al.
Published: (2007-07-01)

Epigenetic regulation of gene responsiveness in Arabidopsis
by: Taiko Kim To, et al.
Published: (2014-01-01)

Contribution of epigenetic variation to adaptation in Arabidopsis
by: Marc W. Schmid, et al.
Published: (2018-10-01)