Transcriptome data of control and Ascosphaera apis infected Apis mellifera ligustica larval guts
Ascosphaera apis is an obligate fungal pathogen of honeybee larvae that leads to chalkbrood, which causes heavy losses for the apiculture in China and many other countries. In this article, guts of 4-, 5-, 6-day-old Apis mellifera ligustica larvae challenged by A. apis (AmT1, AmT2, AmT3) and normal...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2020-04-01
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| Series: | Data in Brief |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S235234092030158X |
| _version_ | 1819209349141102592 |
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| author | Huazhi Chen Yu Du Zhiwei Zhu Cuiling Xiong Yanzhen Zheng Dafu Chen Rui Guo |
| author_facet | Huazhi Chen Yu Du Zhiwei Zhu Cuiling Xiong Yanzhen Zheng Dafu Chen Rui Guo |
| author_sort | Huazhi Chen |
| collection | DOAJ |
| description | Ascosphaera apis is an obligate fungal pathogen of honeybee larvae that leads to chalkbrood, which causes heavy losses for the apiculture in China and many other countries. In this article, guts of 4-, 5-, 6-day-old Apis mellifera ligustica larvae challenged by A. apis (AmT1, AmT2, AmT3) and normal 4-day-old larval guts (AmCK) were sequenced using next-generation sequencing technology. On average, 29,196,197, 28,690,943, 29,779,715 and 30,496,725 raw reads were yielded from these four groups; an average of 29,540,895 clean reads were obtained after quality control. In addition, the mapping ratio of clean reads in treatment and control groups to the Apis mellifera genome were over 97.16%. For more insight please see “Uncovering the immune responses of Apis mellifera ligustica larval gut to Ascosphaera apis infection utilizing transcriptome sequencing” [1]. The raw data were submitted to the National Centre for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database under accession numbers: SRR4084091, SRR4084092, SRR4084095, SRR4084096, SRR4084097, SRR4084098, SRR4084099, SRR4084100, SRR4084101, SRR4084102, SRR4084093, SRR4084094. Keywords: Western honeybee, Apis mellifera ligustica, Ascosphaera apis, Larvae, Gut, Transcriptome |
| first_indexed | 2024-12-23T05:53:52Z |
| format | Article |
| id | doaj.art-32562b7b786e42c3a07310a5248e9137 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-12-23T05:53:52Z |
| publishDate | 2020-04-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-32562b7b786e42c3a07310a5248e91372022-12-21T17:57:53ZengElsevierData in Brief2352-34092020-04-0129Transcriptome data of control and Ascosphaera apis infected Apis mellifera ligustica larval gutsHuazhi Chen0Yu Du1Zhiwei Zhu2Cuiling Xiong3Yanzhen Zheng4Dafu Chen5Rui Guo6College of Animal Sciences (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaCollege of Animal Sciences (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaCollege of Animal Sciences (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaCollege of Animal Sciences (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaCollege of Animal Sciences (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaCollege of Animal Sciences (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaCorresponding author.; College of Animal Sciences (College of Bee Science), Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaAscosphaera apis is an obligate fungal pathogen of honeybee larvae that leads to chalkbrood, which causes heavy losses for the apiculture in China and many other countries. In this article, guts of 4-, 5-, 6-day-old Apis mellifera ligustica larvae challenged by A. apis (AmT1, AmT2, AmT3) and normal 4-day-old larval guts (AmCK) were sequenced using next-generation sequencing technology. On average, 29,196,197, 28,690,943, 29,779,715 and 30,496,725 raw reads were yielded from these four groups; an average of 29,540,895 clean reads were obtained after quality control. In addition, the mapping ratio of clean reads in treatment and control groups to the Apis mellifera genome were over 97.16%. For more insight please see “Uncovering the immune responses of Apis mellifera ligustica larval gut to Ascosphaera apis infection utilizing transcriptome sequencing” [1]. The raw data were submitted to the National Centre for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database under accession numbers: SRR4084091, SRR4084092, SRR4084095, SRR4084096, SRR4084097, SRR4084098, SRR4084099, SRR4084100, SRR4084101, SRR4084102, SRR4084093, SRR4084094. Keywords: Western honeybee, Apis mellifera ligustica, Ascosphaera apis, Larvae, Gut, Transcriptomehttp://www.sciencedirect.com/science/article/pii/S235234092030158X |
| spellingShingle | Huazhi Chen Yu Du Zhiwei Zhu Cuiling Xiong Yanzhen Zheng Dafu Chen Rui Guo Transcriptome data of control and Ascosphaera apis infected Apis mellifera ligustica larval guts Data in Brief |
| title | Transcriptome data of control and Ascosphaera apis infected Apis mellifera ligustica larval guts |
| title_full | Transcriptome data of control and Ascosphaera apis infected Apis mellifera ligustica larval guts |
| title_fullStr | Transcriptome data of control and Ascosphaera apis infected Apis mellifera ligustica larval guts |
| title_full_unstemmed | Transcriptome data of control and Ascosphaera apis infected Apis mellifera ligustica larval guts |
| title_short | Transcriptome data of control and Ascosphaera apis infected Apis mellifera ligustica larval guts |
| title_sort | transcriptome data of control and ascosphaera apis infected apis mellifera ligustica larval guts |
| url | http://www.sciencedirect.com/science/article/pii/S235234092030158X |
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