Characterization and genome analysis of Vibrio phage vB_VhaP_PG11, representing a new viral genus
Vibrio is a kind of common gram-negative bacteria, which is widely distributed in marine and estuarine environments. In the study, a novel marine phage vB_VhaP_PG11, infecting Vibrio hangzhouensis, was isolated from the offshore waters of Qingdao, China. vB_VhaP_PG11 is a double-stranded DNA phage....
| Main Authors: | , , , , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Frontiers Media S.A.
2023-01-01
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| Series: | Frontiers in Marine Science |
| Subjects: | |
| Online Access: | https://www.frontiersin.org/articles/10.3389/fmars.2022.1092917/full |
| _version_ | 1797951366867451904 |
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| author | Yajun Jing Yajun Jing Ruizhe Guo Ruizhe Guo Hongmin Wang Hongmin Wang Yantao Liang Yantao Liang Yantao Liang Yundan Liu Yundan Liu Yifei Feng Qin Ma Hongbing Shao Hongbing Shao Hongbing Shao Yeong Yik Sung Yeong Yik Sung Wen Jye Mok Wen Jye Mok Li Lian Wong Li Lian Wong Yu-Zhong Zhang Yu-Zhong Zhang Andrew McMinn Andrew McMinn Andrew McMinn Min Wang Min Wang Min Wang Min Wang Min Wang Jinyan Xing |
| author_facet | Yajun Jing Yajun Jing Ruizhe Guo Ruizhe Guo Hongmin Wang Hongmin Wang Yantao Liang Yantao Liang Yantao Liang Yundan Liu Yundan Liu Yifei Feng Qin Ma Hongbing Shao Hongbing Shao Hongbing Shao Yeong Yik Sung Yeong Yik Sung Wen Jye Mok Wen Jye Mok Li Lian Wong Li Lian Wong Yu-Zhong Zhang Yu-Zhong Zhang Andrew McMinn Andrew McMinn Andrew McMinn Min Wang Min Wang Min Wang Min Wang Min Wang Jinyan Xing |
| author_sort | Yajun Jing |
| collection | DOAJ |
| description | Vibrio is a kind of common gram-negative bacteria, which is widely distributed in marine and estuarine environments. In the study, a novel marine phage vB_VhaP_PG11, infecting Vibrio hangzhouensis, was isolated from the offshore waters of Qingdao, China. vB_VhaP_PG11 is a double-stranded DNA phage. The whole genome proteomic tree shows that vB_VhaP_PG11 phage is related to two Vibrio phages, Vibrio phage 1.238.A._10N.261.52.F10 and Vibrio phage 1.245.O._10N.261.54.C7, but with low homology. Their amino acids identity with vB_VhaP_PG11 is 42.77 and 41.49% respectively. The prediction results of genome-blast distance phylogeny (GBDP) and the analysis gene-sharing network indicate that vB_VhaP_PG11 belongs to a new genus in Schitoviridae, named Qingschitovirus. The study of Vibrio phage vB_VhaP_PG11 provides basic information contributing to a better understanding of interactions between Vibrio phages and their hosts and helps analyze unknown viral sequences in the metagenomic database. |
| first_indexed | 2024-04-10T22:29:27Z |
| format | Article |
| id | doaj.art-325cef68e219400294474cf0fe72f26c |
| institution | Directory Open Access Journal |
| issn | 2296-7745 |
| language | English |
| last_indexed | 2024-04-10T22:29:27Z |
| publishDate | 2023-01-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Marine Science |
| spelling | doaj.art-325cef68e219400294474cf0fe72f26c2023-01-17T06:02:12ZengFrontiers Media S.A.Frontiers in Marine Science2296-77452023-01-01910.3389/fmars.2022.10929171092917Characterization and genome analysis of Vibrio phage vB_VhaP_PG11, representing a new viral genusYajun Jing0Yajun Jing1Ruizhe Guo2Ruizhe Guo3Hongmin Wang4Hongmin Wang5Yantao Liang6Yantao Liang7Yantao Liang8Yundan Liu9Yundan Liu10Yifei Feng11Qin Ma12Hongbing Shao13Hongbing Shao14Hongbing Shao15Yeong Yik Sung16Yeong Yik Sung17Wen Jye Mok18Wen Jye Mok19Li Lian Wong20Li Lian Wong21Yu-Zhong Zhang22Yu-Zhong Zhang23Andrew McMinn24Andrew McMinn25Andrew McMinn26Min Wang27Min Wang28Min Wang29Min Wang30Min Wang31Jinyan Xing32Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao University, Qingdao, ChinaCollege of Marine Life Sciences, Ocean University of China, Qingdao, ChinaCollege of Marine Life Sciences, Ocean University of China, Qingdao, ChinaInstitute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, ChinaCollege of Marine Life Sciences, Ocean University of China, Qingdao, ChinaInstitute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, ChinaCollege of Marine Life Sciences, Ocean University of China, Qingdao, ChinaInstitute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, ChinaUMT-OUC Joint Academic Centre for Marine Studies, Qingdao, ChinaCollege of Marine Life Sciences, Ocean University of China, Qingdao, ChinaInstitute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, ChinaCollege of Marine Life Sciences, Ocean University of China, Qingdao, ChinaCollege of Marine Life Sciences, Ocean University of China, Qingdao, ChinaCollege of Marine Life Sciences, Ocean University of China, Qingdao, ChinaInstitute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, ChinaUMT-OUC Joint Academic Centre for Marine Studies, Qingdao, ChinaUMT-OUC Joint Academic Centre for Marine Studies, Qingdao, ChinaInstitute of Marine Biotechnology, Universiti Malaysia Terengganu, Kuala Terengganu, MalaysiaUMT-OUC Joint Academic Centre for Marine Studies, Qingdao, ChinaInstitute of Marine Biotechnology, Universiti Malaysia Terengganu, Kuala Terengganu, MalaysiaUMT-OUC Joint Academic Centre for Marine Studies, Qingdao, ChinaInstitute of Marine Biotechnology, Universiti Malaysia Terengganu, Kuala Terengganu, MalaysiaCollege of Marine Life Sciences, Ocean University of China, Qingdao, ChinaState Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao, ChinaCollege of Marine Life Sciences, Ocean University of China, Qingdao, ChinaInstitute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, ChinaInstitute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS, AustraliaDepartment of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao University, Qingdao, ChinaCollege of Marine Life Sciences, Ocean University of China, Qingdao, ChinaInstitute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, ChinaUMT-OUC Joint Academic Centre for Marine Studies, Qingdao, ChinaHaide College, Ocean University of China, Qingdao, ChinaDepartment of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao University, Qingdao, ChinaVibrio is a kind of common gram-negative bacteria, which is widely distributed in marine and estuarine environments. In the study, a novel marine phage vB_VhaP_PG11, infecting Vibrio hangzhouensis, was isolated from the offshore waters of Qingdao, China. vB_VhaP_PG11 is a double-stranded DNA phage. The whole genome proteomic tree shows that vB_VhaP_PG11 phage is related to two Vibrio phages, Vibrio phage 1.238.A._10N.261.52.F10 and Vibrio phage 1.245.O._10N.261.54.C7, but with low homology. Their amino acids identity with vB_VhaP_PG11 is 42.77 and 41.49% respectively. The prediction results of genome-blast distance phylogeny (GBDP) and the analysis gene-sharing network indicate that vB_VhaP_PG11 belongs to a new genus in Schitoviridae, named Qingschitovirus. The study of Vibrio phage vB_VhaP_PG11 provides basic information contributing to a better understanding of interactions between Vibrio phages and their hosts and helps analyze unknown viral sequences in the metagenomic database.https://www.frontiersin.org/articles/10.3389/fmars.2022.1092917/fullvibrio phagegenomic and comparative genomic analysisphylogenetic analysisschitoviridaeqingschitovirus |
| spellingShingle | Yajun Jing Yajun Jing Ruizhe Guo Ruizhe Guo Hongmin Wang Hongmin Wang Yantao Liang Yantao Liang Yantao Liang Yundan Liu Yundan Liu Yifei Feng Qin Ma Hongbing Shao Hongbing Shao Hongbing Shao Yeong Yik Sung Yeong Yik Sung Wen Jye Mok Wen Jye Mok Li Lian Wong Li Lian Wong Yu-Zhong Zhang Yu-Zhong Zhang Andrew McMinn Andrew McMinn Andrew McMinn Min Wang Min Wang Min Wang Min Wang Min Wang Jinyan Xing Characterization and genome analysis of Vibrio phage vB_VhaP_PG11, representing a new viral genus Frontiers in Marine Science vibrio phage genomic and comparative genomic analysis phylogenetic analysis schitoviridae qingschitovirus |
| title | Characterization and genome analysis of Vibrio phage vB_VhaP_PG11, representing a new viral genus |
| title_full | Characterization and genome analysis of Vibrio phage vB_VhaP_PG11, representing a new viral genus |
| title_fullStr | Characterization and genome analysis of Vibrio phage vB_VhaP_PG11, representing a new viral genus |
| title_full_unstemmed | Characterization and genome analysis of Vibrio phage vB_VhaP_PG11, representing a new viral genus |
| title_short | Characterization and genome analysis of Vibrio phage vB_VhaP_PG11, representing a new viral genus |
| title_sort | characterization and genome analysis of vibrio phage vb vhap pg11 representing a new viral genus |
| topic | vibrio phage genomic and comparative genomic analysis phylogenetic analysis schitoviridae qingschitovirus |
| url | https://www.frontiersin.org/articles/10.3389/fmars.2022.1092917/full |
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