Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation.
Core promoters are stretches of DNA at the beginning of genes that contain information that facilitates the binding of transcription initiation complexes. Different functional subsets of genes have core promoters with distinct architectures and characteristic motifs. Some of these motifs inform the...
Main Authors: | Sarvesh Nikumbh, Boris Lenhard |
---|---|
Format: | Article |
Language: | English |
Published: |
Public Library of Science (PLoS)
2023-11-01
|
Series: | PLoS Computational Biology |
Online Access: | https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011491&type=printable |
Similar Items
-
Quantitative analysis of complex materials using non-negative matrix factorisation
by: Geddes, H
Published: (2019) -
Binary matrix factorisation via column generation
by: Kovacs, RA, et al.
Published: (2021) -
Global centralised and structured discriminative non‐negative matrix factorisation for hyperspectral unmixing
by: Xue Li, et al.
Published: (2023-08-01) -
Automatic image annotation by a loosely joint non‐negative matrix factorisation
by: Roya Rad, et al.
Published: (2015-12-01) -
Binary matrix factorisation and completion via integer programming
by: Gunluk, O, et al.
Published: (2023)