Full-Length Transcriptome of the Whale Shark (Rhincodon typus) Facilitates the Genome Information

Full-Length Transcriptome of the Whale Shark (Rhincodon typus) Facilitates the Genome Information

Rhincodon typus is a keystone and indicator species in marine ecosystems. Meanwhile, R. typus has been listed on the IUCN red list of vulnerable species. Here we used ONT platform to determine the full-length (FL) transcriptome of R. typus and obtained 14,930 FL transcripts. Among all FL transcripts...

Full description

Bibliographic Details
Main Authors:	Fangrui Lou, Li Wang, Zhiyang Wang, Lei Wang, Linlin Zhao, Qingjie Zhou, Zhichuang Lu, Yongzheng Tang
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2022-02-01
Series:	Frontiers in Marine Science
Subjects:	Rhincodon typus full-length transcriptome ONT sequencing genome annotation transcriptome structure
Online Access:	https://www.frontiersin.org/articles/10.3389/fmars.2021.821253/full

Similar Items

Observation of whale shark Rhincodon typus Smith, 1828 in oceanic waters of the Bay of Bengal, India
by: Chelliah Babu, et al.
Published: (2017-10-01)

Observation of whale shark Rhincodon typus Smith, 1828 in oceanic waters of the Bay of Bengal, India
by: Chelliah Babu, et al.
Published: (2017-12-01)

Draft sequencing and assembly of the genome of the world’s largest fish, the whale shark: Rhincodon typus Smith 1828
by: Timothy D. Read, et al.
Published: (2017-07-01)

Movement, Behavior, and Habitat Use of Whale Sharks (Rhincodon typus) in the Tropical Eastern Pacific Ocean
by: Hector M. Guzman, et al.
Published: (2022-06-01)

Novel Insights Into the Genetic Population Connectivity of Transient Whale Sharks (Rhincodon typus) in Pacific Panama Provide Crucial Data for Conservation Efforts
by: Héctor M. Guzmán, et al.
Published: (2021-10-01)

Distribución espacio-temporal de variables fisicoquímicas y biológicas en el hábitat del tiburón ballena Rhincodon typus (Orectolobiformes: Rhincodontidae) al norte del Caribe Mexicano
by: Natalí Cárdenas-Palomo, et al.
Published: (2010-03-01)

The whale shark genome reveals patterns of vertebrate gene family evolution
by: Milton Tan, et al.
Published: (2021-08-01)

Seasonal variability of copepods and cladocerans in Bahía de los Ángeles (Gulf of California) and importance of Acartia clausi as food for whale sharks
by: BE Lavaniegos, et al.
Published: (2011-11-01)

Satellite tagging highlights the importance of productive Mozambican coastal waters to the ecology and conservation of whale sharks
by: Christoph A. Rohner, et al.
Published: (2018-01-01)

Asymptotic Growth of Whale Sharks Suggests Sex-Specific Life-History Strategies
by: Mark G. Meekan, et al.
Published: (2020-09-01)

The ecological connectivity of whale shark aggregations in the Indian Ocean: a photo-identification approach
by: Samantha Andrzejaczek, et al.
Published: (2016-01-01)

No Place Like Home? High Residency and Predictable Seasonal Movement of Whale Sharks Off Tanzania
by: Christoph A. Rohner, et al.
Published: (2020-06-01)

Pieces in a global puzzle: Population genetics at two whale shark aggregations in the western Indian Ocean
by: Royale S. Hardenstine, et al.
Published: (2022-01-01)

Improving sightings-derived residency estimation for whale shark aggregations: A novel metric applied to a global data set
by: Gonzalo Araujo, et al.
Published: (2022-07-01)

Error and bias in size estimates of whale sharks: implications for understanding demography
by: Ana M. M. Sequeira, et al.
Published: (2016-01-01)

Long-Term Photo-Identification Reveals the Population Dynamics and Strong Site Fidelity of Adult Whale Sharks to the Coastal Waters of Donsol, Philippines
by: Emer McCoy, et al.
Published: (2018-08-01)

Illegal Trade in Protected Sharks: The Case of Artisanal Whale Shark Meat Fisheries in Java, Indonesia
by: Vincent Nijman
Published: (2023-08-01)

Microplastics on the Menu: Plastics Pollute Indonesian Manta Ray and Whale Shark Feeding Grounds
by: Elitza S. Germanov, et al.
Published: (2019-11-01)

Does bathymetry drive coastal whale shark (Rhincodon typus) aggregations?
by: Joshua P. Copping, et al.
Published: (2018-06-01)

Zum Typus des ossetischen Kasussystems
by: Karl Horst Schmidt
Published: (1993-12-01)

Species associated with whale sharks Rhincodon typus (Orectolobiformes, Rhincodontidae) in the Galapagos Archipelago
by: Sofia Green, et al.
Published: (2023-03-01)

Regional movements of satellite‐tagged whale sharks Rhincodon typus in the Gulf of Aden
by: Samantha Andrzejaczek, et al.
Published: (2021-05-01)

Editorial: Novel applications of ONT technologies in genomics and transcriptomics
by: Eugenia Poliakov, et al.
Published: (2024-03-01)

Transferencia de espermatóforos en el camarón de roca Rhynchocinetes typus (Caridea: Rhynchocinetidae) Spermatophores transference in the rock shrimp Rhynchocinetes typus (Caridea: Rhynchocinetidae)
by: Rubí Martínez, et al.
Published: (2010-01-01)

An unprecedented aggregation of whale sharks, Rhincodon typus, in Mexican coastal waters of the Caribbean Sea.
by: Rafael de la Parra Venegas, et al.
Published: (2011-04-01)

First Insights Into the Horizontal Movements of Whale Sharks (Rhincodon typus) in the Northern Arabian Sea
by: Lucy M. Arrowsmith, et al.
Published: (2021-07-01)

Association of whale sharks (Rhincodon typus) with thermo-biological frontal systems of the eastern tropical Pacific.
by: John P Ryan, et al.
Published: (2017-01-01)

St. Helena: An Important Reproductive Habitat for Whale Sharks (Rhincodon typus) in the Central South Atlantic
by: Cameron T. Perry, et al.
Published: (2020-11-01)

Characterization of the complete mitochondrial genome of longneck croaker Pseudotolithus typus (Perciformes: Sciaenidae)
by: Jong-Oh Kim, et al.
Published: (2020-04-01)

Population structure and residency patterns of whale sharks, Rhincodon typus, at a provisioning site in Cebu, Philippines
by: Gonzalo Araujo, et al.
Published: (2014-09-01)

Emergent community architecture despite distinct diversity in the global whale shark (Rhincodon typus) epidermal microbiome
by: Michael P. Doane, et al.
Published: (2023-08-01)

Occurrences of whale shark (Rhincodon typus Smith, 1828) in the Saint Peter and Saint Paul archipelago, Brazil
by: FHV. Hazin, et al.

Correction: Association of whale sharks (Rhincodon typus) with thermo-biological frontal systems of the eastern tropical Pacific.
by: John P Ryan, et al.
Published: (2018-01-01)

Seasonal Occurrence, Horizontal Movements, and Habitat Use Patterns of Whale Sharks (Rhincodon typus) in the Gulf of Mexico
by: Eric R. Hoffmayer, et al.
Published: (2021-01-01)

Whale Shark (Rhincodon typus) Seasonal Occurrence, Abundance and Demographic Structure in the Mid-Equatorial Atlantic Ocean.
by: Bruno C L Macena, et al.
Published: (2016-01-01)

The seasonal occurrence of the Whale Shark Rhincodon typus (Smith, 1828) (Orectolobiformes: Rhincodontidae) along the Odisha coast, India
by: Shesdev Patro, et al.
Published: (2017-04-01)

Erratum to: draft sequencing and assembly of the genome of the world’s largest fish, the whale shark: Rhincodon typus smith 1828
by: Timothy D. Read, et al.
Published: (2017-09-01)

Nanopore Direct RNA Sequencing Reveals the Short-Term Salt Stress Response in Maize Roots
by: Shidong He, et al.
Published: (2024-01-01)

Full-length transcriptome of Oocystis borgei under stress condition
by: Chengcheng Deng, et al.
Published: (2023-10-01)

The complete mitochondrial genome of the longneck croaker, pseudotolithus typus Bleeker, 1863 from Sierra Leone
by: Yeongju Jang, et al.
Published: (2021-05-01)