Sequencing and analysis of the complete mitochondrial genome of the taiga shrew (Sorex isodon) from China
The complete mitogenome sequence of the taiga shrew (Sorex isodon) was determined using long PCR. The genome was 17,008 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication and one control region. The overall base comp...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1462113 |
| _version_ | 1797640671999295488 |
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| author | Liu Zhu Bai Wei Wang Ao-Nan Tian Xin-Min Li Dian-Wei |
| author_facet | Liu Zhu Bai Wei Wang Ao-Nan Tian Xin-Min Li Dian-Wei |
| author_sort | Liu Zhu |
| collection | DOAJ |
| description | The complete mitogenome sequence of the taiga shrew (Sorex isodon) was determined using long PCR. The genome was 17,008 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication and one control region. The overall base composition of the heavy strand is A (32.5%), C (24.5%), T (28.5%), and G (13.5%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. The extended termination-associated sequence domain, the central conserved domain and the conserved sequence block domain are defined in the mitochondrial genome control region of the taiga shrew. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. The eight Sorex species formed a monophyletic group with the high bootstrap value (100%) in all examinations. |
| first_indexed | 2024-03-11T13:35:10Z |
| format | Article |
| id | doaj.art-35dc022681134bad8e6efac81967cc7a |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:35:10Z |
| publishDate | 2018-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-35dc022681134bad8e6efac81967cc7a2023-11-02T15:57:23ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-01-013146646810.1080/23802359.2018.14621131462113Sequencing and analysis of the complete mitochondrial genome of the taiga shrew (Sorex isodon) from ChinaLiu Zhu0Bai Wei1Wang Ao-Nan2Tian Xin-Min3Li Dian-Wei4Mudanjiang Normal UniversityMudanjiang Normal UniversityMudanjiang Normal UniversityMudanjiang Normal UniversityMudanjiang Normal UniversityThe complete mitogenome sequence of the taiga shrew (Sorex isodon) was determined using long PCR. The genome was 17,008 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication and one control region. The overall base composition of the heavy strand is A (32.5%), C (24.5%), T (28.5%), and G (13.5%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. The extended termination-associated sequence domain, the central conserved domain and the conserved sequence block domain are defined in the mitochondrial genome control region of the taiga shrew. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. The eight Sorex species formed a monophyletic group with the high bootstrap value (100%) in all examinations.http://dx.doi.org/10.1080/23802359.2018.1462113control regionmitogenomephylogenetic treesthe taiga shrew |
| spellingShingle | Liu Zhu Bai Wei Wang Ao-Nan Tian Xin-Min Li Dian-Wei Sequencing and analysis of the complete mitochondrial genome of the taiga shrew (Sorex isodon) from China Mitochondrial DNA. Part B. Resources control region mitogenome phylogenetic trees the taiga shrew |
| title | Sequencing and analysis of the complete mitochondrial genome of the taiga shrew (Sorex isodon) from China |
| title_full | Sequencing and analysis of the complete mitochondrial genome of the taiga shrew (Sorex isodon) from China |
| title_fullStr | Sequencing and analysis of the complete mitochondrial genome of the taiga shrew (Sorex isodon) from China |
| title_full_unstemmed | Sequencing and analysis of the complete mitochondrial genome of the taiga shrew (Sorex isodon) from China |
| title_short | Sequencing and analysis of the complete mitochondrial genome of the taiga shrew (Sorex isodon) from China |
| title_sort | sequencing and analysis of the complete mitochondrial genome of the taiga shrew sorex isodon from china |
| topic | control region mitogenome phylogenetic trees the taiga shrew |
| url | http://dx.doi.org/10.1080/23802359.2018.1462113 |
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