A Revised and Improved Version of the Northern Wheatear (<i>Oenanthe oenanthe</i>) Transcriptome
This work presents an updated and more complete version of the transcriptome of a long-distance migrant, the Northern Wheatear (<i>Oenanthe oenanthe</i>). The improved transcriptome was produced from the independent mRNA sequencing of adipose tissue, brain, intestines, liver, skin, and m...
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| Format: | Article |
| Language: | English |
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MDPI AG
2021-03-01
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| Series: | Diversity |
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| Online Access: | https://www.mdpi.com/1424-2818/13/4/151 |
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| author | Roberto Carlos Frias-Soler Lilian Villarín Pildaín Michael Wink Franz Bairlein |
| author_facet | Roberto Carlos Frias-Soler Lilian Villarín Pildaín Michael Wink Franz Bairlein |
| author_sort | Roberto Carlos Frias-Soler |
| collection | DOAJ |
| description | This work presents an updated and more complete version of the transcriptome of a long-distance migrant, the Northern Wheatear (<i>Oenanthe oenanthe</i>). The improved transcriptome was produced from the independent mRNA sequencing of adipose tissue, brain, intestines, liver, skin, and muscle tissues sampled during the autumnal migratory season. This new transcriptome has better sequencing coverage and is more representative of the species’ migratory phenotype. We assembled 20,248 transcripts grouped into 16,430 genes, from which 78% were successfully annotated. All the standard assembly quality parameters were improved in the second transcriptome version. |
| first_indexed | 2024-03-10T12:45:19Z |
| format | Article |
| id | doaj.art-36f1eb8313fc424da8178081290556da |
| institution | Directory Open Access Journal |
| issn | 1424-2818 |
| language | English |
| last_indexed | 2024-03-10T12:45:19Z |
| publishDate | 2021-03-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Diversity |
| spelling | doaj.art-36f1eb8313fc424da8178081290556da2023-11-21T13:31:24ZengMDPI AGDiversity1424-28182021-03-0113415110.3390/d13040151A Revised and Improved Version of the Northern Wheatear (<i>Oenanthe oenanthe</i>) TranscriptomeRoberto Carlos Frias-Soler0Lilian Villarín Pildaín1Michael Wink2Franz Bairlein3Institute of Avian Research, An der Vogelwarte 21, 26386 Wilhelmshaven, GermanyInstitute of Pharmacy and Molecular Biotechnology, Heidelberg University, Im Neuenheimer Feld 364, 69120 Heidelberg, GermanyInstitute of Pharmacy and Molecular Biotechnology, Heidelberg University, Im Neuenheimer Feld 364, 69120 Heidelberg, GermanyInstitute of Avian Research, An der Vogelwarte 21, 26386 Wilhelmshaven, GermanyThis work presents an updated and more complete version of the transcriptome of a long-distance migrant, the Northern Wheatear (<i>Oenanthe oenanthe</i>). The improved transcriptome was produced from the independent mRNA sequencing of adipose tissue, brain, intestines, liver, skin, and muscle tissues sampled during the autumnal migratory season. This new transcriptome has better sequencing coverage and is more representative of the species’ migratory phenotype. We assembled 20,248 transcripts grouped into 16,430 genes, from which 78% were successfully annotated. All the standard assembly quality parameters were improved in the second transcriptome version.https://www.mdpi.com/1424-2818/13/4/151RNA-SeqIllumina technologybird transcriptomemigratory phenotype |
| spellingShingle | Roberto Carlos Frias-Soler Lilian Villarín Pildaín Michael Wink Franz Bairlein A Revised and Improved Version of the Northern Wheatear (<i>Oenanthe oenanthe</i>) Transcriptome Diversity RNA-Seq Illumina technology bird transcriptome migratory phenotype |
| title | A Revised and Improved Version of the Northern Wheatear (<i>Oenanthe oenanthe</i>) Transcriptome |
| title_full | A Revised and Improved Version of the Northern Wheatear (<i>Oenanthe oenanthe</i>) Transcriptome |
| title_fullStr | A Revised and Improved Version of the Northern Wheatear (<i>Oenanthe oenanthe</i>) Transcriptome |
| title_full_unstemmed | A Revised and Improved Version of the Northern Wheatear (<i>Oenanthe oenanthe</i>) Transcriptome |
| title_short | A Revised and Improved Version of the Northern Wheatear (<i>Oenanthe oenanthe</i>) Transcriptome |
| title_sort | revised and improved version of the northern wheatear i oenanthe oenanthe i transcriptome |
| topic | RNA-Seq Illumina technology bird transcriptome migratory phenotype |
| url | https://www.mdpi.com/1424-2818/13/4/151 |
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