Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm.
Comparative genomics and transcriptomic analyses were performed on two agronomically important groups of genes from oil palm versus other major crop species and the model organism, Arabidopsis thaliana. The first analysis was of two gene families with key roles in regulation of oil quality and in pa...
| Main Authors: | , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Public Library of Science (PLoS)
2018-01-01
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| Series: | PLoS ONE |
| Online Access: | http://europepmc.org/articles/PMC5908059?pdf=render |
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| author | Rozana Rosli Nadzirah Amiruddin Mohd Amin Ab Halim Pek-Lan Chan Kuang-Lim Chan Norazah Azizi Priscilla E Morris Eng-Ti Leslie Low Meilina Ong-Abdullah Ravigadevi Sambanthamurthi Rajinder Singh Denis J Murphy |
| author_facet | Rozana Rosli Nadzirah Amiruddin Mohd Amin Ab Halim Pek-Lan Chan Kuang-Lim Chan Norazah Azizi Priscilla E Morris Eng-Ti Leslie Low Meilina Ong-Abdullah Ravigadevi Sambanthamurthi Rajinder Singh Denis J Murphy |
| author_sort | Rozana Rosli |
| collection | DOAJ |
| description | Comparative genomics and transcriptomic analyses were performed on two agronomically important groups of genes from oil palm versus other major crop species and the model organism, Arabidopsis thaliana. The first analysis was of two gene families with key roles in regulation of oil quality and in particular the accumulation of oleic acid, namely stearoyl ACP desaturases (SAD) and acyl-acyl carrier protein (ACP) thioesterases (FAT). In both cases, these were found to be large gene families with complex expression profiles across a wide range of tissue types and developmental stages. The detailed classification of the oil palm SAD and FAT genes has enabled the updating of the latest version of the oil palm gene model. The second analysis focused on disease resistance (R) genes in order to elucidate possible candidates for breeding of pathogen tolerance/resistance. Ortholog analysis showed that 141 out of the 210 putative oil palm R genes had homologs in banana and rice. These genes formed 37 clusters with 634 orthologous genes. Classification of the 141 oil palm R genes showed that the genes belong to the Kinase (7), CNL (95), MLO-like (8), RLK (3) and Others (28) categories. The CNL R genes formed eight clusters. Expression data for selected R genes also identified potential candidates for breeding of disease resistance traits. Furthermore, these findings can provide information about the species evolution as well as the identification of agronomically important genes in oil palm and other major crops. |
| first_indexed | 2024-04-12T20:40:15Z |
| format | Article |
| id | doaj.art-37190b6474db4d6988bf8e76fd9cbd70 |
| institution | Directory Open Access Journal |
| issn | 1932-6203 |
| language | English |
| last_indexed | 2024-04-12T20:40:15Z |
| publishDate | 2018-01-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| series | PLoS ONE |
| spelling | doaj.art-37190b6474db4d6988bf8e76fd9cbd702022-12-22T03:17:25ZengPublic Library of Science (PLoS)PLoS ONE1932-62032018-01-01134e019479210.1371/journal.pone.0194792Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm.Rozana RosliNadzirah AmiruddinMohd Amin Ab HalimPek-Lan ChanKuang-Lim ChanNorazah AziziPriscilla E MorrisEng-Ti Leslie LowMeilina Ong-AbdullahRavigadevi SambanthamurthiRajinder SinghDenis J MurphyComparative genomics and transcriptomic analyses were performed on two agronomically important groups of genes from oil palm versus other major crop species and the model organism, Arabidopsis thaliana. The first analysis was of two gene families with key roles in regulation of oil quality and in particular the accumulation of oleic acid, namely stearoyl ACP desaturases (SAD) and acyl-acyl carrier protein (ACP) thioesterases (FAT). In both cases, these were found to be large gene families with complex expression profiles across a wide range of tissue types and developmental stages. The detailed classification of the oil palm SAD and FAT genes has enabled the updating of the latest version of the oil palm gene model. The second analysis focused on disease resistance (R) genes in order to elucidate possible candidates for breeding of pathogen tolerance/resistance. Ortholog analysis showed that 141 out of the 210 putative oil palm R genes had homologs in banana and rice. These genes formed 37 clusters with 634 orthologous genes. Classification of the 141 oil palm R genes showed that the genes belong to the Kinase (7), CNL (95), MLO-like (8), RLK (3) and Others (28) categories. The CNL R genes formed eight clusters. Expression data for selected R genes also identified potential candidates for breeding of disease resistance traits. Furthermore, these findings can provide information about the species evolution as well as the identification of agronomically important genes in oil palm and other major crops.http://europepmc.org/articles/PMC5908059?pdf=render |
| spellingShingle | Rozana Rosli Nadzirah Amiruddin Mohd Amin Ab Halim Pek-Lan Chan Kuang-Lim Chan Norazah Azizi Priscilla E Morris Eng-Ti Leslie Low Meilina Ong-Abdullah Ravigadevi Sambanthamurthi Rajinder Singh Denis J Murphy Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm. PLoS ONE |
| title | Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm. |
| title_full | Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm. |
| title_fullStr | Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm. |
| title_full_unstemmed | Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm. |
| title_short | Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm. |
| title_sort | comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and cnl disease resistance genes in oil palm |
| url | http://europepmc.org/articles/PMC5908059?pdf=render |
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