Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909
The complete chloroplast (cp) genome of Caulerpa sertularioides f. longipes was first assembled and characterized using Illumina pair-end sequencing from the South China Sea. It is 133,626 bp long, with a GC content of 32.94%. In total, 92 genes were identified in the genome, and they consisted 60 p...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1676668 |
| _version_ | 1797639632539615232 |
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| author | Rongxia Wang Hongtao Liu Yongbo Wang Hongji Ke Jiawei Fan Fuxiao Chen Wei Tan |
| author_facet | Rongxia Wang Hongtao Liu Yongbo Wang Hongji Ke Jiawei Fan Fuxiao Chen Wei Tan |
| author_sort | Rongxia Wang |
| collection | DOAJ |
| description | The complete chloroplast (cp) genome of Caulerpa sertularioides f. longipes was first assembled and characterized using Illumina pair-end sequencing from the South China Sea. It is 133,626 bp long, with a GC content of 32.94%. In total, 92 genes were identified in the genome, and they consisted 60 protein-coding genes (PCGs), 30 tRNA genes, and 2 rRNA genes. Like other species in Caulerpa, the whole cp genome of C. sertularioides f. longipes did not demonstrate an obvious quadripartite structure. A total of 31 microsatellites (SSRs) were identified in the cp genome using MISA. A phylogenetic tree revealed that C. sertularioides f. longipes was closer to Caulerpa cupressoides, which further clarified the phylogenetic relationships of species in Caulerpa. |
| first_indexed | 2024-03-11T13:19:21Z |
| format | Article |
| id | doaj.art-371b21fe42c9411494ea06c6376a032a |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:21Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-371b21fe42c9411494ea06c6376a032a2023-11-03T10:38:49ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01423573357410.1080/23802359.2019.16766681676668Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909Rongxia Wang0Hongtao Liu1Yongbo Wang2Hongji Ke3Jiawei Fan4Fuxiao Chen5Wei Tan6Hainan Academy of Ocean and Fisheries SciencesHainan Academy of Ocean and Fisheries SciencesHainan Academy of Ocean and Fisheries SciencesHainan Academy of Ocean and Fisheries SciencesHainan Academy of Ocean and Fisheries SciencesHainan Academy of Ocean and Fisheries SciencesHainan Academy of Ocean and Fisheries SciencesThe complete chloroplast (cp) genome of Caulerpa sertularioides f. longipes was first assembled and characterized using Illumina pair-end sequencing from the South China Sea. It is 133,626 bp long, with a GC content of 32.94%. In total, 92 genes were identified in the genome, and they consisted 60 protein-coding genes (PCGs), 30 tRNA genes, and 2 rRNA genes. Like other species in Caulerpa, the whole cp genome of C. sertularioides f. longipes did not demonstrate an obvious quadripartite structure. A total of 31 microsatellites (SSRs) were identified in the cp genome using MISA. A phylogenetic tree revealed that C. sertularioides f. longipes was closer to Caulerpa cupressoides, which further clarified the phylogenetic relationships of species in Caulerpa.http://dx.doi.org/10.1080/23802359.2019.1676668chloroplast genomecaulerpa sertularioides f. longipesphylogenetic analysis |
| spellingShingle | Rongxia Wang Hongtao Liu Yongbo Wang Hongji Ke Jiawei Fan Fuxiao Chen Wei Tan Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909 Mitochondrial DNA. Part B. Resources chloroplast genome caulerpa sertularioides f. longipes phylogenetic analysis |
| title | Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909 |
| title_full | Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909 |
| title_fullStr | Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909 |
| title_full_unstemmed | Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909 |
| title_short | Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909 |
| title_sort | complete chloroplast genome of green alga caulerpa sertularioides f longipes j agardh collins 1909 |
| topic | chloroplast genome caulerpa sertularioides f. longipes phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1676668 |
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