MetAMDB: Metabolic Atom Mapping Database
MetAMDB is an open-source metabolic atom mapping database, providing atom mappings for around 43,000 metabolic reactions. Each atom mapping can be inspected and downloaded either as an RXN file or as a graphic in SVG format. In addition, MetAMDB offers the possibility of automatically creating atom...
| Main Authors: | , |
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| Format: | Article |
| Language: | English |
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MDPI AG
2022-01-01
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| Series: | Metabolites |
| Subjects: | |
| Online Access: | https://www.mdpi.com/2218-1989/12/2/122 |
| _version_ | 1797478107538522112 |
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| author | Collin Starke Andre Wegner |
| author_facet | Collin Starke Andre Wegner |
| author_sort | Collin Starke |
| collection | DOAJ |
| description | MetAMDB is an open-source metabolic atom mapping database, providing atom mappings for around 43,000 metabolic reactions. Each atom mapping can be inspected and downloaded either as an RXN file or as a graphic in SVG format. In addition, MetAMDB offers the possibility of automatically creating atom mapping models based on user-specified metabolic networks. These models can be of any size (small to genome-scale) and can subsequently be used in standard <inline-formula><math xmlns="http://www.w3.org/1998/Math/MathML" display="inline"><semantics><msup><mrow></mrow><mn>13</mn></msup></semantics></math></inline-formula>C metabolic flux analysis software. |
| first_indexed | 2024-03-09T21:27:20Z |
| format | Article |
| id | doaj.art-38f8a783af5443efa7832f0e9e5c221f |
| institution | Directory Open Access Journal |
| issn | 2218-1989 |
| language | English |
| last_indexed | 2024-03-09T21:27:20Z |
| publishDate | 2022-01-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Metabolites |
| spelling | doaj.art-38f8a783af5443efa7832f0e9e5c221f2023-11-23T21:04:46ZengMDPI AGMetabolites2218-19892022-01-0112212210.3390/metabo12020122MetAMDB: Metabolic Atom Mapping DatabaseCollin Starke0Andre Wegner1Department of Bioinformatics and Biochemistry, Braunschweig Integrated Centre of Systems Biology (BRICS), Technische Universität Braunschweig, Rebenring 56, 38106 Braunschweig, GermanyDepartment of Bioinformatics and Biochemistry, Braunschweig Integrated Centre of Systems Biology (BRICS), Technische Universität Braunschweig, Rebenring 56, 38106 Braunschweig, GermanyMetAMDB is an open-source metabolic atom mapping database, providing atom mappings for around 43,000 metabolic reactions. Each atom mapping can be inspected and downloaded either as an RXN file or as a graphic in SVG format. In addition, MetAMDB offers the possibility of automatically creating atom mapping models based on user-specified metabolic networks. These models can be of any size (small to genome-scale) and can subsequently be used in standard <inline-formula><math xmlns="http://www.w3.org/1998/Math/MathML" display="inline"><semantics><msup><mrow></mrow><mn>13</mn></msup></semantics></math></inline-formula>C metabolic flux analysis software.https://www.mdpi.com/2218-1989/12/2/122atom mappingsatom transitionsatom mapping modelsystems biochemistry<sup>13</sup>C metabolic flux analysismetabolic model |
| spellingShingle | Collin Starke Andre Wegner MetAMDB: Metabolic Atom Mapping Database Metabolites atom mappings atom transitions atom mapping model systems biochemistry <sup>13</sup>C metabolic flux analysis metabolic model |
| title | MetAMDB: Metabolic Atom Mapping Database |
| title_full | MetAMDB: Metabolic Atom Mapping Database |
| title_fullStr | MetAMDB: Metabolic Atom Mapping Database |
| title_full_unstemmed | MetAMDB: Metabolic Atom Mapping Database |
| title_short | MetAMDB: Metabolic Atom Mapping Database |
| title_sort | metamdb metabolic atom mapping database |
| topic | atom mappings atom transitions atom mapping model systems biochemistry <sup>13</sup>C metabolic flux analysis metabolic model |
| url | https://www.mdpi.com/2218-1989/12/2/122 |
| work_keys_str_mv | AT collinstarke metamdbmetabolicatommappingdatabase AT andrewegner metamdbmetabolicatommappingdatabase |