The complete mitochondrial genome of Luffa acutangula
Based on PacBio de novo assembly, we report the first complete mitochondrial genome of Luffa acutangula (460,333 bp) containing nine large chloroplast-derived sequences (1.9–17.3 kb) across the mitogenome. The base composition of the mitogenome in descending order is A: 28.02%, C: 22.04%, G: 21.83%...
| Main Authors: | , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1810165 |
| _version_ | 1827772765457874944 |
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| author | Panthita Ruang-areerate Jeremy Shearman Wasitthee Kongkachana Nukoon Jomchai Thippawan Yoocha Sonicha U-thoomporn Nattapol Narong John Robert Sheedy Supat Mekiyanon Wirulda Pootakham Sithichoke Tangphatsornruang |
| author_facet | Panthita Ruang-areerate Jeremy Shearman Wasitthee Kongkachana Nukoon Jomchai Thippawan Yoocha Sonicha U-thoomporn Nattapol Narong John Robert Sheedy Supat Mekiyanon Wirulda Pootakham Sithichoke Tangphatsornruang |
| author_sort | Panthita Ruang-areerate |
| collection | DOAJ |
| description | Based on PacBio de novo assembly, we report the first complete mitochondrial genome of Luffa acutangula (460,333 bp) containing nine large chloroplast-derived sequences (1.9–17.3 kb) across the mitogenome. The base composition of the mitogenome in descending order is A: 28.02%, C: 22.04%, G: 21.83% and T: 28.10%, and the G + C content is 43.87%. There are 63 mitochondrial genes including 40 protein-coding genes, 3 rRNA genes and 20 tRNA genes. Additionally, a total of 288 repeats ranging from 31 to 5,301 bp were identified, accounting for 5.7% of the mitogenome. Two large direct repeats (5,301 and 405 bp) within the mitogenome were found for the formation of four subgenomic molecules. A phylogenetic analysis showed that L. acutangula was closely related to other species in Cucurbiaceae. This mitogenome provides useful genetic information for evolutionary studies. |
| first_indexed | 2024-03-11T13:12:25Z |
| format | Article |
| id | doaj.art-396d7855f88c45feb176b5dbc5cd7c85 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:12:25Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-396d7855f88c45feb176b5dbc5cd7c852023-11-03T14:00:32ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01533208320910.1080/23802359.2020.18101651810165The complete mitochondrial genome of Luffa acutangulaPanthita Ruang-areerate0Jeremy Shearman1Wasitthee Kongkachana2Nukoon Jomchai3Thippawan Yoocha4Sonicha U-thoomporn5Nattapol Narong6John Robert Sheedy7Supat Mekiyanon8Wirulda Pootakham9Sithichoke Tangphatsornruang10National Omics Center, National Science and Technology Development AgencyNational Omics Center, National Science and Technology Development AgencyNational Omics Center, National Science and Technology Development AgencyNational Omics Center, National Science and Technology Development AgencyNational Omics Center, National Science and Technology Development AgencyNational Omics Center, National Science and Technology Development AgencyNational Omics Center, National Science and Technology Development AgencyChia Tai Company Limited, Phra Khanong DistrictChia Tai Company Limited, Phra Khanong DistrictNational Omics Center, National Science and Technology Development AgencyNational Omics Center, National Science and Technology Development AgencyBased on PacBio de novo assembly, we report the first complete mitochondrial genome of Luffa acutangula (460,333 bp) containing nine large chloroplast-derived sequences (1.9–17.3 kb) across the mitogenome. The base composition of the mitogenome in descending order is A: 28.02%, C: 22.04%, G: 21.83% and T: 28.10%, and the G + C content is 43.87%. There are 63 mitochondrial genes including 40 protein-coding genes, 3 rRNA genes and 20 tRNA genes. Additionally, a total of 288 repeats ranging from 31 to 5,301 bp were identified, accounting for 5.7% of the mitogenome. Two large direct repeats (5,301 and 405 bp) within the mitogenome were found for the formation of four subgenomic molecules. A phylogenetic analysis showed that L. acutangula was closely related to other species in Cucurbiaceae. This mitogenome provides useful genetic information for evolutionary studies.http://dx.doi.org/10.1080/23802359.2020.1810165luffacucurbitaceaemitochondrial genomechloroplast-derived sequences |
| spellingShingle | Panthita Ruang-areerate Jeremy Shearman Wasitthee Kongkachana Nukoon Jomchai Thippawan Yoocha Sonicha U-thoomporn Nattapol Narong John Robert Sheedy Supat Mekiyanon Wirulda Pootakham Sithichoke Tangphatsornruang The complete mitochondrial genome of Luffa acutangula Mitochondrial DNA. Part B. Resources luffa cucurbitaceae mitochondrial genome chloroplast-derived sequences |
| title | The complete mitochondrial genome of Luffa acutangula |
| title_full | The complete mitochondrial genome of Luffa acutangula |
| title_fullStr | The complete mitochondrial genome of Luffa acutangula |
| title_full_unstemmed | The complete mitochondrial genome of Luffa acutangula |
| title_short | The complete mitochondrial genome of Luffa acutangula |
| title_sort | complete mitochondrial genome of luffa acutangula |
| topic | luffa cucurbitaceae mitochondrial genome chloroplast-derived sequences |
| url | http://dx.doi.org/10.1080/23802359.2020.1810165 |
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