The human microbiome in evolution

Abstract The trillions of microbes living in the gut—the gut microbiota—play an important role in human biology and disease. While much has been done to explore its diversity, a full understanding of our microbiomes demands an evolutionary perspective. In this review, we compare microbiomes from hum...

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Main Authors: Emily R. Davenport, Jon G. Sanders, Se Jin Song, Katherine R. Amato, Andrew G. Clark, Rob Knight
Format: Article
Language:English
Published: BMC 2017-12-01
Series:BMC Biology
Subjects:
Online Access:http://link.springer.com/article/10.1186/s12915-017-0454-7
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author Emily R. Davenport
Jon G. Sanders
Se Jin Song
Katherine R. Amato
Andrew G. Clark
Rob Knight
author_facet Emily R. Davenport
Jon G. Sanders
Se Jin Song
Katherine R. Amato
Andrew G. Clark
Rob Knight
author_sort Emily R. Davenport
collection DOAJ
description Abstract The trillions of microbes living in the gut—the gut microbiota—play an important role in human biology and disease. While much has been done to explore its diversity, a full understanding of our microbiomes demands an evolutionary perspective. In this review, we compare microbiomes from human populations, placing them in the context of microbes from humanity’s near and distant animal relatives. We discuss potential mechanisms to generate host-specific microbiome configurations and the consequences of disrupting those configurations. Finally, we propose that this broader phylogenetic perspective is useful for understanding the mechanisms underlying human–microbiome interactions.
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spelling doaj.art-39ffd08adcb44972b3478cd48293499b2022-12-21T19:09:25ZengBMCBMC Biology1741-70072017-12-0115111210.1186/s12915-017-0454-7The human microbiome in evolutionEmily R. Davenport0Jon G. Sanders1Se Jin Song2Katherine R. Amato3Andrew G. Clark4Rob Knight5Department of Molecular Biology and Genetics, Cornell UniversityDepartment of Pediatrics, University of California San DiegoDepartment of Pediatrics, University of California San DiegoDepartment of Anthropology, Northwestern UniversityDepartment of Molecular Biology and Genetics, Cornell UniversityDepartment of Pediatrics, University of California San DiegoAbstract The trillions of microbes living in the gut—the gut microbiota—play an important role in human biology and disease. While much has been done to explore its diversity, a full understanding of our microbiomes demands an evolutionary perspective. In this review, we compare microbiomes from human populations, placing them in the context of microbes from humanity’s near and distant animal relatives. We discuss potential mechanisms to generate host-specific microbiome configurations and the consequences of disrupting those configurations. Finally, we propose that this broader phylogenetic perspective is useful for understanding the mechanisms underlying human–microbiome interactions.http://link.springer.com/article/10.1186/s12915-017-0454-7MicrobiomeEvolutionCodiversificationHabitat filteringTransmission
spellingShingle Emily R. Davenport
Jon G. Sanders
Se Jin Song
Katherine R. Amato
Andrew G. Clark
Rob Knight
The human microbiome in evolution
BMC Biology
Microbiome
Evolution
Codiversification
Habitat filtering
Transmission
title The human microbiome in evolution
title_full The human microbiome in evolution
title_fullStr The human microbiome in evolution
title_full_unstemmed The human microbiome in evolution
title_short The human microbiome in evolution
title_sort human microbiome in evolution
topic Microbiome
Evolution
Codiversification
Habitat filtering
Transmission
url http://link.springer.com/article/10.1186/s12915-017-0454-7
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