The complete chloroplast genome characteristics of Polygala crotalarioides Buch.-Ham. ex DC. (Polygalaceae) from Yunnan, China
Polygala crotalarioides Buch.-Ham. ex DC. (Polygalaceae) is a perennial herbaceous plant widely distributed in southwest China. Its chloroplast genome sequence was obtained using Illumina NovaSeq sequencing technology, and then was assembled, annotated, and characterized. The total length of chlorop...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-10-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1964396 |
| _version_ | 1797638774429057024 |
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| author | Jiayu Ma Junmin Wang Congying Li Jie Liu Can Chen Yan Hua |
| author_facet | Jiayu Ma Junmin Wang Congying Li Jie Liu Can Chen Yan Hua |
| author_sort | Jiayu Ma |
| collection | DOAJ |
| description | Polygala crotalarioides Buch.-Ham. ex DC. (Polygalaceae) is a perennial herbaceous plant widely distributed in southwest China. Its chloroplast genome sequence was obtained using Illumina NovaSeq sequencing technology, and then was assembled, annotated, and characterized. The total length of chloroplast genome is 164,269 bp and it contained a large (LCS, 82,697 bp) and a small (SSC, 8083 bp) single copy region, separated by a pair of inverted repeats (IRA/IRB, 36,744 bp). The overall GC content of genome was 36.8% and corresponding values of the LSC, SSC, and IR regions are 34.9%, 29.5%, and 39.7%, respectively. There are 135 genes that were predicted including 89 protein-coding, 38 tRNA, and 8 rRNA genes. The maximum-likelihood (ML) phylogenetic tree reconstructed by IQ-TREE indicated that P. crotalarioides had a strong genetic relationship with P. tenuifolia, P. sibirica, and P. japonica. In summary, the complete chloroplast genome of P. crotalarioides is reported for the first time, which is of great significance for future research on the evolutionary phylogeny and protection of Polygala. |
| first_indexed | 2024-03-11T13:07:18Z |
| format | Article |
| id | doaj.art-3a50c63d941f40358c6a9d72835ee6d4 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:07:18Z |
| publishDate | 2021-10-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-3a50c63d941f40358c6a9d72835ee6d42023-11-03T14:28:30ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-10-016102838284010.1080/23802359.2021.19643961964396The complete chloroplast genome characteristics of Polygala crotalarioides Buch.-Ham. ex DC. (Polygalaceae) from Yunnan, ChinaJiayu Ma0Junmin Wang1Congying Li2Jie Liu3Can Chen4Yan Hua5Key Laboratory for Forest Resources Conservation and Utilisation in the Southwest Mountains of China Southwest Forestry University, Ministry of EducationKey Laboratory for Forest Resources Conservation and Utilisation in the Southwest Mountains of China Southwest Forestry University, Ministry of EducationYunnan Yihua Biological Co., LtdKey Laboratory of Dairy Science, Ministry of Education, Northeast Agricultural UniversityKey Laboratory for Forest Resources Conservation and Utilisation in the Southwest Mountains of China Southwest Forestry University, Ministry of EducationKey Laboratory for Forest Resources Conservation and Utilisation in the Southwest Mountains of China Southwest Forestry University, Ministry of EducationPolygala crotalarioides Buch.-Ham. ex DC. (Polygalaceae) is a perennial herbaceous plant widely distributed in southwest China. Its chloroplast genome sequence was obtained using Illumina NovaSeq sequencing technology, and then was assembled, annotated, and characterized. The total length of chloroplast genome is 164,269 bp and it contained a large (LCS, 82,697 bp) and a small (SSC, 8083 bp) single copy region, separated by a pair of inverted repeats (IRA/IRB, 36,744 bp). The overall GC content of genome was 36.8% and corresponding values of the LSC, SSC, and IR regions are 34.9%, 29.5%, and 39.7%, respectively. There are 135 genes that were predicted including 89 protein-coding, 38 tRNA, and 8 rRNA genes. The maximum-likelihood (ML) phylogenetic tree reconstructed by IQ-TREE indicated that P. crotalarioides had a strong genetic relationship with P. tenuifolia, P. sibirica, and P. japonica. In summary, the complete chloroplast genome of P. crotalarioides is reported for the first time, which is of great significance for future research on the evolutionary phylogeny and protection of Polygala.http://dx.doi.org/10.1080/23802359.2021.1964396chloroplast genomephylogenetic analysispolygala crotalarioides |
| spellingShingle | Jiayu Ma Junmin Wang Congying Li Jie Liu Can Chen Yan Hua The complete chloroplast genome characteristics of Polygala crotalarioides Buch.-Ham. ex DC. (Polygalaceae) from Yunnan, China Mitochondrial DNA. Part B. Resources chloroplast genome phylogenetic analysis polygala crotalarioides |
| title | The complete chloroplast genome characteristics of Polygala crotalarioides Buch.-Ham. ex DC. (Polygalaceae) from Yunnan, China |
| title_full | The complete chloroplast genome characteristics of Polygala crotalarioides Buch.-Ham. ex DC. (Polygalaceae) from Yunnan, China |
| title_fullStr | The complete chloroplast genome characteristics of Polygala crotalarioides Buch.-Ham. ex DC. (Polygalaceae) from Yunnan, China |
| title_full_unstemmed | The complete chloroplast genome characteristics of Polygala crotalarioides Buch.-Ham. ex DC. (Polygalaceae) from Yunnan, China |
| title_short | The complete chloroplast genome characteristics of Polygala crotalarioides Buch.-Ham. ex DC. (Polygalaceae) from Yunnan, China |
| title_sort | complete chloroplast genome characteristics of polygala crotalarioides buch ham ex dc polygalaceae from yunnan china |
| topic | chloroplast genome phylogenetic analysis polygala crotalarioides |
| url | http://dx.doi.org/10.1080/23802359.2021.1964396 |
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