Prediction of transcription factor bindings sites affected by SNPs located at the osteopontin promoter
This data contains information related to the research article entitled “Osteopontin splice variants and polymorphisms in Cancer Progression and Prognosis” [1]. Here, we describe an in silico analysis of transcription factors that could have altered binding to their DNA target sequence as a result o...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2017-10-01
|
| Series: | Data in Brief |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340917303591 |
| _version_ | 1818942860068651008 |
|---|---|
| author | Marco Antonio Briones-Orta S. Eréndira Avendaño-Vázquez Diana Ivette Aparicio-Bautista Jason D. Coombes Georg F. Weber Wing-Kin Syn |
| author_facet | Marco Antonio Briones-Orta S. Eréndira Avendaño-Vázquez Diana Ivette Aparicio-Bautista Jason D. Coombes Georg F. Weber Wing-Kin Syn |
| author_sort | Marco Antonio Briones-Orta |
| collection | DOAJ |
| description | This data contains information related to the research article entitled “Osteopontin splice variants and polymorphisms in Cancer Progression and Prognosis” [1]. Here, we describe an in silico analysis of transcription factors that could have altered binding to their DNA target sequence as a result of SNPs in the osteopontin gene promoter. We concentrated on SNPs associated with cancer risk and development.
The analysis was performed with PROMO v3.0.2 software which incorporates TRANSFACT v6.4 of. We also present a figure depicting the putative transcription factor binding according to genotype. |
| first_indexed | 2024-12-20T07:18:08Z |
| format | Article |
| id | doaj.art-3ad73710a6304cb286248b1bf6f5c6a5 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-12-20T07:18:08Z |
| publishDate | 2017-10-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-3ad73710a6304cb286248b1bf6f5c6a52022-12-21T19:48:45ZengElsevierData in Brief2352-34092017-10-0114C53854210.1016/j.dib.2017.07.057Prediction of transcription factor bindings sites affected by SNPs located at the osteopontin promoterMarco Antonio Briones-Orta0S. Eréndira Avendaño-Vázquez1Diana Ivette Aparicio-Bautista2Jason D. Coombes3Georg F. Weber4Wing-Kin Syn5Regeneration and Repair, Institute of Hepatology, Foundation for Liver Research, London, United KingdomInstituto Nacional de Medicina Genómica, INMEGEN, Periférico Sur 4809, Ciudad de México 14610,. MéxicoInstituto Nacional de Medicina Genómica, INMEGEN, Periférico Sur 4809, Ciudad de México 14610,. MéxicoRegeneration and Repair, Institute of Hepatology, Foundation for Liver Research, London, United KingdomJames L. Winkle College of Pharmacy, University of Cincinnati Academic Health Center, Cincinnati, OH, United StatesRegeneration and Repair, Institute of Hepatology, Foundation for Liver Research, London, United KingdomThis data contains information related to the research article entitled “Osteopontin splice variants and polymorphisms in Cancer Progression and Prognosis” [1]. Here, we describe an in silico analysis of transcription factors that could have altered binding to their DNA target sequence as a result of SNPs in the osteopontin gene promoter. We concentrated on SNPs associated with cancer risk and development. The analysis was performed with PROMO v3.0.2 software which incorporates TRANSFACT v6.4 of. We also present a figure depicting the putative transcription factor binding according to genotype.http://www.sciencedirect.com/science/article/pii/S2352340917303591 |
| spellingShingle | Marco Antonio Briones-Orta S. Eréndira Avendaño-Vázquez Diana Ivette Aparicio-Bautista Jason D. Coombes Georg F. Weber Wing-Kin Syn Prediction of transcription factor bindings sites affected by SNPs located at the osteopontin promoter Data in Brief |
| title | Prediction of transcription factor bindings sites affected by SNPs located at the osteopontin promoter |
| title_full | Prediction of transcription factor bindings sites affected by SNPs located at the osteopontin promoter |
| title_fullStr | Prediction of transcription factor bindings sites affected by SNPs located at the osteopontin promoter |
| title_full_unstemmed | Prediction of transcription factor bindings sites affected by SNPs located at the osteopontin promoter |
| title_short | Prediction of transcription factor bindings sites affected by SNPs located at the osteopontin promoter |
| title_sort | prediction of transcription factor bindings sites affected by snps located at the osteopontin promoter |
| url | http://www.sciencedirect.com/science/article/pii/S2352340917303591 |
| work_keys_str_mv | AT marcoantoniobrionesorta predictionoftranscriptionfactorbindingssitesaffectedbysnpslocatedattheosteopontinpromoter AT serendiraavendanovazquez predictionoftranscriptionfactorbindingssitesaffectedbysnpslocatedattheosteopontinpromoter AT dianaivetteapariciobautista predictionoftranscriptionfactorbindingssitesaffectedbysnpslocatedattheosteopontinpromoter AT jasondcoombes predictionoftranscriptionfactorbindingssitesaffectedbysnpslocatedattheosteopontinpromoter AT georgfweber predictionoftranscriptionfactorbindingssitesaffectedbysnpslocatedattheosteopontinpromoter AT wingkinsyn predictionoftranscriptionfactorbindingssitesaffectedbysnpslocatedattheosteopontinpromoter |