The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China
Cyphotheca, a shrub narrowly endemic to Yunnan, southwest China, is a monotypic genus of Sonerileae in Melastomataceae. The species, Cyphotheca montana, is dwindling and is listed as ‘Near Threatened (NT)’ by IUCN Red List of China. Herein, we report the complete chloroplast genome (cpDNA) sequence...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1627932 |
| _version_ | 1797639766057943040 |
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| author | Zhenying Wen Sijin Zeng Tingzhang Li Guoqiang Zhang Donghui Peng |
| author_facet | Zhenying Wen Sijin Zeng Tingzhang Li Guoqiang Zhang Donghui Peng |
| author_sort | Zhenying Wen |
| collection | DOAJ |
| description | Cyphotheca, a shrub narrowly endemic to Yunnan, southwest China, is a monotypic genus of Sonerileae in Melastomataceae. The species, Cyphotheca montana, is dwindling and is listed as ‘Near Threatened (NT)’ by IUCN Red List of China. Herein, we report the complete chloroplast genome (cpDNA) sequence assembled from Illumina pair-end sequencing data. The complete chloroplast genome was 156,424 bp in length, which includes two inverted repeat regions (IRs) of 26,776 bp each, which were separated by a large single copy region (LSC) 85,900 bp and a small single copy region (SSC) 16,972 bp. The chloroplast genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content in the chloroplast genome of C. montana was 37.0%. The phylogenomic analysis showed that C. montana is sister to Barthea barthei. |
| first_indexed | 2024-03-11T13:21:23Z |
| format | Article |
| id | doaj.art-3b009d2cc14f4f4e8d1e74bcadd4461d |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:21:23Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-3b009d2cc14f4f4e8d1e74bcadd4461d2023-11-03T10:28:34ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01422295229610.1080/23802359.2019.16279321627932The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in ChinaZhenying Wen0Sijin Zeng1Tingzhang Li2Guoqiang Zhang3Donghui Peng4Fujian Agriculture and Forestry UniversityThe National Orchid Conservation Center of China and The Orchid Conservation and Research Center of ShenzhenThe National Orchid Conservation Center of China and The Orchid Conservation and Research Center of ShenzhenThe National Orchid Conservation Center of China and The Orchid Conservation and Research Center of ShenzhenFujian Agriculture and Forestry UniversityCyphotheca, a shrub narrowly endemic to Yunnan, southwest China, is a monotypic genus of Sonerileae in Melastomataceae. The species, Cyphotheca montana, is dwindling and is listed as ‘Near Threatened (NT)’ by IUCN Red List of China. Herein, we report the complete chloroplast genome (cpDNA) sequence assembled from Illumina pair-end sequencing data. The complete chloroplast genome was 156,424 bp in length, which includes two inverted repeat regions (IRs) of 26,776 bp each, which were separated by a large single copy region (LSC) 85,900 bp and a small single copy region (SSC) 16,972 bp. The chloroplast genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content in the chloroplast genome of C. montana was 37.0%. The phylogenomic analysis showed that C. montana is sister to Barthea barthei.http://dx.doi.org/10.1080/23802359.2019.1627932cyphotheca montanamelastomataceaechloroplast genomeillumina sequencingphylogenetic analysis |
| spellingShingle | Zhenying Wen Sijin Zeng Tingzhang Li Guoqiang Zhang Donghui Peng The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China Mitochondrial DNA. Part B. Resources cyphotheca montana melastomataceae chloroplast genome illumina sequencing phylogenetic analysis |
| title | The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China |
| title_full | The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China |
| title_fullStr | The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China |
| title_full_unstemmed | The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China |
| title_short | The complete chloroplast genome sequence of monotypic Cyphotheca (Melastomataceae), an endemic genus in China |
| title_sort | complete chloroplast genome sequence of monotypic cyphotheca melastomataceae an endemic genus in china |
| topic | cyphotheca montana melastomataceae chloroplast genome illumina sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1627932 |
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