Viewing SARS-CoV-2 Nucleocapsid Protein in Terms of Molecular Flexibility

The latest coronavirus SARS-CoV-2, which causes coronavirus disease 2019 (COVID-19) pneumonia leading to the pandemic, contains 29 proteins. Among them, nucleocapsid protein (N<sup>CoV2</sup>) is one of the abundant proteins and shows multiple functions including packaging the RNA genome...

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Bibliographic Details
Main Author: Tatsuhito Matsuo
Format: Article
Language:English
Published: MDPI AG 2021-05-01
Series:Biology
Subjects:
Online Access:https://www.mdpi.com/2079-7737/10/6/454
Description
Summary:The latest coronavirus SARS-CoV-2, which causes coronavirus disease 2019 (COVID-19) pneumonia leading to the pandemic, contains 29 proteins. Among them, nucleocapsid protein (N<sup>CoV2</sup>) is one of the abundant proteins and shows multiple functions including packaging the RNA genome during the infection cycle. It has also emerged as a potential drug target. In this review, the current status of the research of N<sup>CoV2</sup> is described in terms of molecular structure and dynamics. N<sup>CoV2</sup> consists of two domains, i.e., the N-terminal domain (NTD) and the C-terminal domain (CTD) with a disordered region between them. Recent simulation studies have identified several potential drugs that can bind to NTD or CTD with high affinity. Moreover, it was shown that the degree of flexibility in the disordered region has a large effect on drug binding rate, suggesting the importance of molecular flexibility for the N<sup>CoV2</sup> function. Molecular flexibility has also been shown to be integral to the formation of droplets, where N<sup>CoV2</sup>, RNA and/or other viral proteins gather through liquid-liquid phase separation and considered important for viral replication. Finally, as one of the future research directions, a strategy for obtaining the structural and dynamical information on the proteins contained in droplets is presented.
ISSN:2079-7737