The complete chloroplast genome sequence of Senna bicapsularis
The complete chloroplast genome sequence of Senna bicapsularis was characterized from Illumina pair-end sequencing. The chloroplast genome of S. bicapsularis was 161,056 bp in length, containing a large single-copy region (LSC) of 90,416 bp, a small single-copy region (SSC) of 18,538 bp, and two inv...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1765216 |
| _version_ | 1797639200779010048 |
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| author | Zhe Hou |
| author_facet | Zhe Hou |
| author_sort | Zhe Hou |
| collection | DOAJ |
| description | The complete chloroplast genome sequence of Senna bicapsularis was characterized from Illumina pair-end sequencing. The chloroplast genome of S. bicapsularis was 161,056 bp in length, containing a large single-copy region (LSC) of 90,416 bp, a small single-copy region (SSC) of 18,538 bp, and two inverted repeat (IR) regions of 26,051 bp. The overall GC content is 36.20%, while the correponding values of the LSC, SSC, and IR regions are 64.5%, 69.4%, and 60.2%, respectively. The genome contains 129 complete genes, including8 rRNAs, 37 tRNAs and 84 protein coding genes. A phylogenetic analysis showed that Senna tora and Erythrophleumfordiiform the basis of the produced evolutionary tree. S.bicapsularis and S. occidentalis, which belongto the group Cassia, share the closest relationship. The analysis of the cp genome of S.bicapsularisprovides crucial genetic information for further studies of this precious species and the taxonomy, phylogenetics and evolution of Cassia. |
| first_indexed | 2024-03-11T13:14:30Z |
| format | Article |
| id | doaj.art-3c1291092e95428b89c42f43f3528b31 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:14:30Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-3c1291092e95428b89c42f43f3528b312023-11-03T13:50:21ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01532095209610.1080/23802359.2020.17652161765216The complete chloroplast genome sequence of Senna bicapsularisZhe Hou0Key Laboratory of Southwest China Wildlife Resources Conservation (Ministry of Education), China West Normal UniversityThe complete chloroplast genome sequence of Senna bicapsularis was characterized from Illumina pair-end sequencing. The chloroplast genome of S. bicapsularis was 161,056 bp in length, containing a large single-copy region (LSC) of 90,416 bp, a small single-copy region (SSC) of 18,538 bp, and two inverted repeat (IR) regions of 26,051 bp. The overall GC content is 36.20%, while the correponding values of the LSC, SSC, and IR regions are 64.5%, 69.4%, and 60.2%, respectively. The genome contains 129 complete genes, including8 rRNAs, 37 tRNAs and 84 protein coding genes. A phylogenetic analysis showed that Senna tora and Erythrophleumfordiiform the basis of the produced evolutionary tree. S.bicapsularis and S. occidentalis, which belongto the group Cassia, share the closest relationship. The analysis of the cp genome of S.bicapsularisprovides crucial genetic information for further studies of this precious species and the taxonomy, phylogenetics and evolution of Cassia.http://dx.doi.org/10.1080/23802359.2020.1765216s. bicapsularischloroplast genomephylogenetic analysisgenetic information |
| spellingShingle | Zhe Hou The complete chloroplast genome sequence of Senna bicapsularis Mitochondrial DNA. Part B. Resources s. bicapsularis chloroplast genome phylogenetic analysis genetic information |
| title | The complete chloroplast genome sequence of Senna bicapsularis |
| title_full | The complete chloroplast genome sequence of Senna bicapsularis |
| title_fullStr | The complete chloroplast genome sequence of Senna bicapsularis |
| title_full_unstemmed | The complete chloroplast genome sequence of Senna bicapsularis |
| title_short | The complete chloroplast genome sequence of Senna bicapsularis |
| title_sort | complete chloroplast genome sequence of senna bicapsularis |
| topic | s. bicapsularis chloroplast genome phylogenetic analysis genetic information |
| url | http://dx.doi.org/10.1080/23802359.2020.1765216 |
| work_keys_str_mv | AT zhehou thecompletechloroplastgenomesequenceofsennabicapsularis AT zhehou completechloroplastgenomesequenceofsennabicapsularis |