Single nucleotide polymorphisms (SNPs) in coding regions of canine dopamine- and serotonin-related genes
<p>Abstract</p> <p>Background</p> <p>Polymorphism in genes of regulating enzymes, transporters and receptors of the neurotransmitters of the central nervous system have been associated with altered behaviour, and single nucleotide polymorphisms (SNPs) represent the most...
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| Format: | Article |
| Language: | English |
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BMC
2008-01-01
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| Series: | BMC Genetics |
| Online Access: | http://www.biomedcentral.com/1471-2156/9/10 |
| _version_ | 1811234151889633280 |
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| author | Lingaas Frode Våge Jørn |
| author_facet | Lingaas Frode Våge Jørn |
| author_sort | Lingaas Frode |
| collection | DOAJ |
| description | <p>Abstract</p> <p>Background</p> <p>Polymorphism in genes of regulating enzymes, transporters and receptors of the neurotransmitters of the central nervous system have been associated with altered behaviour, and single nucleotide polymorphisms (SNPs) represent the most frequent type of genetic variation. The serotonin and dopamine signalling systems have a central influence on different behavioural phenotypes, both of invertebrates and vertebrates, and this study was undertaken in order to explore genetic variation that may be associated with variation in behaviour.</p> <p>Results</p> <p>Single nucleotide polymorphisms in canine genes related to behaviour were identified by individually sequencing eight dogs (<it>Canis familiaris</it>) of different breeds. Eighteen genes from the dopamine and the serotonin systems were screened, revealing 34 SNPs distributed in 14 of the 18 selected genes. A total of 24,895 bp coding sequence was sequenced yielding an average frequency of one SNP per 732 bp (1/732). A total of 11 non-synonymous SNPs (nsSNPs), which may be involved in alteration of protein function, were detected. Of these 11 nsSNPs, six resulted in a substitution of amino acid residue with concomitant change in structural parameters.</p> <p>Conclusion</p> <p>We have identified a number of coding SNPs in behaviour-related genes, several of which change the amino acids of the proteins. Some of the canine SNPs exist in codons that are evolutionary conserved between five compared species, and predictions indicate that they may have a functional effect on the protein. The reported coding SNP frequency of the studied genes falls within the range of SNP frequencies reported earlier in the dog and other mammalian species. Novel SNPs are presented and the results show a significant genetic variation in expressed sequences in this group of genes. The results can contribute to an improved understanding of the genetics of behaviour.</p> |
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| format | Article |
| id | doaj.art-3c7aeadfc55e434691f2e4fe7ba95bcb |
| institution | Directory Open Access Journal |
| issn | 1471-2156 |
| language | English |
| last_indexed | 2024-04-12T11:31:54Z |
| publishDate | 2008-01-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Genetics |
| spelling | doaj.art-3c7aeadfc55e434691f2e4fe7ba95bcb2022-12-22T03:34:59ZengBMCBMC Genetics1471-21562008-01-01911010.1186/1471-2156-9-10Single nucleotide polymorphisms (SNPs) in coding regions of canine dopamine- and serotonin-related genesLingaas FrodeVåge Jørn<p>Abstract</p> <p>Background</p> <p>Polymorphism in genes of regulating enzymes, transporters and receptors of the neurotransmitters of the central nervous system have been associated with altered behaviour, and single nucleotide polymorphisms (SNPs) represent the most frequent type of genetic variation. The serotonin and dopamine signalling systems have a central influence on different behavioural phenotypes, both of invertebrates and vertebrates, and this study was undertaken in order to explore genetic variation that may be associated with variation in behaviour.</p> <p>Results</p> <p>Single nucleotide polymorphisms in canine genes related to behaviour were identified by individually sequencing eight dogs (<it>Canis familiaris</it>) of different breeds. Eighteen genes from the dopamine and the serotonin systems were screened, revealing 34 SNPs distributed in 14 of the 18 selected genes. A total of 24,895 bp coding sequence was sequenced yielding an average frequency of one SNP per 732 bp (1/732). A total of 11 non-synonymous SNPs (nsSNPs), which may be involved in alteration of protein function, were detected. Of these 11 nsSNPs, six resulted in a substitution of amino acid residue with concomitant change in structural parameters.</p> <p>Conclusion</p> <p>We have identified a number of coding SNPs in behaviour-related genes, several of which change the amino acids of the proteins. Some of the canine SNPs exist in codons that are evolutionary conserved between five compared species, and predictions indicate that they may have a functional effect on the protein. The reported coding SNP frequency of the studied genes falls within the range of SNP frequencies reported earlier in the dog and other mammalian species. Novel SNPs are presented and the results show a significant genetic variation in expressed sequences in this group of genes. The results can contribute to an improved understanding of the genetics of behaviour.</p>http://www.biomedcentral.com/1471-2156/9/10 |
| spellingShingle | Lingaas Frode Våge Jørn Single nucleotide polymorphisms (SNPs) in coding regions of canine dopamine- and serotonin-related genes BMC Genetics |
| title | Single nucleotide polymorphisms (SNPs) in coding regions of canine dopamine- and serotonin-related genes |
| title_full | Single nucleotide polymorphisms (SNPs) in coding regions of canine dopamine- and serotonin-related genes |
| title_fullStr | Single nucleotide polymorphisms (SNPs) in coding regions of canine dopamine- and serotonin-related genes |
| title_full_unstemmed | Single nucleotide polymorphisms (SNPs) in coding regions of canine dopamine- and serotonin-related genes |
| title_short | Single nucleotide polymorphisms (SNPs) in coding regions of canine dopamine- and serotonin-related genes |
| title_sort | single nucleotide polymorphisms snps in coding regions of canine dopamine and serotonin related genes |
| url | http://www.biomedcentral.com/1471-2156/9/10 |
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