Genome Characterisation of the CGMMV Virus Population in Australia—Informing Plant Biosecurity Policy
The detection of cucumber green mottle mosaic (CGMMV) in the Northern Territory (NT), Australia, in 2014 led to the introduction of strict quarantine measures for the importation of cucurbit seeds by the Australian federal government. Further detections in Queensland, Western Australia (WA), New Sou...
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| Format: | Article |
| Language: | English |
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MDPI AG
2023-03-01
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| Series: | Viruses |
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| Online Access: | https://www.mdpi.com/1999-4915/15/3/743 |
| _version_ | 1797608603492810752 |
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| author | Joanne Mackie Paul R. Campbell Monica A. Kehoe Lucy T. T. Tran-Nguyen Brendan C. Rodoni Fiona E. Constable |
| author_facet | Joanne Mackie Paul R. Campbell Monica A. Kehoe Lucy T. T. Tran-Nguyen Brendan C. Rodoni Fiona E. Constable |
| author_sort | Joanne Mackie |
| collection | DOAJ |
| description | The detection of cucumber green mottle mosaic (CGMMV) in the Northern Territory (NT), Australia, in 2014 led to the introduction of strict quarantine measures for the importation of cucurbit seeds by the Australian federal government. Further detections in Queensland, Western Australia (WA), New South Wales and South Australia occurred in the period 2015–2020. To explore the diversity of the current Australian CGMMV population, 35 new coding sequence complete genomes for CGMMV isolates from Australian incursions and surveys were prepared for this study. In conjunction with published genomes from the NT and WA, sequence, phylogenetic, and genetic variation and variant analyses were performed, and the data were compared with those for international CGMMV isolates. Based on these analyses, it can be inferred that the Australian CGMMV population resulted from a single virus source via multiple introductions. |
| first_indexed | 2024-03-11T05:45:35Z |
| format | Article |
| id | doaj.art-3cc2eab0727a47638e0899f34ed75c23 |
| institution | Directory Open Access Journal |
| issn | 1999-4915 |
| language | English |
| last_indexed | 2024-03-11T05:45:35Z |
| publishDate | 2023-03-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Viruses |
| spelling | doaj.art-3cc2eab0727a47638e0899f34ed75c232023-11-17T14:23:43ZengMDPI AGViruses1999-49152023-03-0115374310.3390/v15030743Genome Characterisation of the CGMMV Virus Population in Australia—Informing Plant Biosecurity PolicyJoanne Mackie0Paul R. Campbell1Monica A. Kehoe2Lucy T. T. Tran-Nguyen3Brendan C. Rodoni4Fiona E. Constable5School of Applied Systems Biology, La Trobe University, Melbourne, VIC 3083, AustraliaHorticulture and Forestry Science, Department of Agriculture and Fisheries, Ecosciences Precinct, Brisbane, QLD 4102, AustraliaBiosecurity and Sustainability, Department of Primary Industries and Regional Development, South Perth, WA 6151, AustraliaPlant Health Australia, Canberra, ACT 2600, AustraliaSchool of Applied Systems Biology, La Trobe University, Melbourne, VIC 3083, AustraliaSchool of Applied Systems Biology, La Trobe University, Melbourne, VIC 3083, AustraliaThe detection of cucumber green mottle mosaic (CGMMV) in the Northern Territory (NT), Australia, in 2014 led to the introduction of strict quarantine measures for the importation of cucurbit seeds by the Australian federal government. Further detections in Queensland, Western Australia (WA), New South Wales and South Australia occurred in the period 2015–2020. To explore the diversity of the current Australian CGMMV population, 35 new coding sequence complete genomes for CGMMV isolates from Australian incursions and surveys were prepared for this study. In conjunction with published genomes from the NT and WA, sequence, phylogenetic, and genetic variation and variant analyses were performed, and the data were compared with those for international CGMMV isolates. Based on these analyses, it can be inferred that the Australian CGMMV population resulted from a single virus source via multiple introductions.https://www.mdpi.com/1999-4915/15/3/743cucumber green mottle mosaic virusgenetic diversitymedian-joining network |
| spellingShingle | Joanne Mackie Paul R. Campbell Monica A. Kehoe Lucy T. T. Tran-Nguyen Brendan C. Rodoni Fiona E. Constable Genome Characterisation of the CGMMV Virus Population in Australia—Informing Plant Biosecurity Policy Viruses cucumber green mottle mosaic virus genetic diversity median-joining network |
| title | Genome Characterisation of the CGMMV Virus Population in Australia—Informing Plant Biosecurity Policy |
| title_full | Genome Characterisation of the CGMMV Virus Population in Australia—Informing Plant Biosecurity Policy |
| title_fullStr | Genome Characterisation of the CGMMV Virus Population in Australia—Informing Plant Biosecurity Policy |
| title_full_unstemmed | Genome Characterisation of the CGMMV Virus Population in Australia—Informing Plant Biosecurity Policy |
| title_short | Genome Characterisation of the CGMMV Virus Population in Australia—Informing Plant Biosecurity Policy |
| title_sort | genome characterisation of the cgmmv virus population in australia informing plant biosecurity policy |
| topic | cucumber green mottle mosaic virus genetic diversity median-joining network |
| url | https://www.mdpi.com/1999-4915/15/3/743 |
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