The complete chloroplast genome sequence of an endemic species Pearl chestnut (Castanea henryi)
Castanea henryi is Pearl chestnut, or the willow-leaved chestnut, which is widely distributed in the warm temperate subtropical climates of China. We determined the complete chloroplast genome sequence for C. henryi using Illumina sequencing data. The complete chloroplast sequence is 160,907 bp in l...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1553522 |
| _version_ | 1797640531202801664 |
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| author | Xiao-Xiao Gao Feng Yan Meng Liu Saman Zulfiqar Peng Zhao |
| author_facet | Xiao-Xiao Gao Feng Yan Meng Liu Saman Zulfiqar Peng Zhao |
| author_sort | Xiao-Xiao Gao |
| collection | DOAJ |
| description | Castanea henryi is Pearl chestnut, or the willow-leaved chestnut, which is widely distributed in the warm temperate subtropical climates of China. We determined the complete chloroplast genome sequence for C. henryi using Illumina sequencing data. The complete chloroplast sequence is 160,907 bp in length and contains a pair of 25,689 bp inverted repeats (IRs), a large single-copy (LSC) region of 90,531 bp, and a small single-copy (SSC) region of 18,998 bp. It contains 132 genes, including 102 protein-coding genes, eight ribosomal RNA genes (four RNA species), 46 transfer RNA genes, and two pseudogenes (ycf1 and ndhK). The overall GC content of the whole genome is 36.7%. Phylogenetic analysis based on 21 chloroplast genomes indicates that C. henryi is closely related to Chinese chestnut (C. mollissima) in Fagaceae. |
| first_indexed | 2024-03-11T13:33:21Z |
| format | Article |
| id | doaj.art-3cc2f741b08443f6bcf78a9b00856fa4 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:33:21Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-3cc2f741b08443f6bcf78a9b00856fa42023-11-02T16:07:25ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-014155155210.1080/23802359.2018.15535221553522The complete chloroplast genome sequence of an endemic species Pearl chestnut (Castanea henryi)Xiao-Xiao Gao0Feng Yan1Meng Liu2Saman Zulfiqar3Peng Zhao4Northwest UniversityNorthwest UniversityNorthwest UniversityNorthwest UniversityNorthwest UniversityCastanea henryi is Pearl chestnut, or the willow-leaved chestnut, which is widely distributed in the warm temperate subtropical climates of China. We determined the complete chloroplast genome sequence for C. henryi using Illumina sequencing data. The complete chloroplast sequence is 160,907 bp in length and contains a pair of 25,689 bp inverted repeats (IRs), a large single-copy (LSC) region of 90,531 bp, and a small single-copy (SSC) region of 18,998 bp. It contains 132 genes, including 102 protein-coding genes, eight ribosomal RNA genes (four RNA species), 46 transfer RNA genes, and two pseudogenes (ycf1 and ndhK). The overall GC content of the whole genome is 36.7%. Phylogenetic analysis based on 21 chloroplast genomes indicates that C. henryi is closely related to Chinese chestnut (C. mollissima) in Fagaceae.http://dx.doi.org/10.1080/23802359.2018.1553522castanea henryichestnutchloroplastphylogeneticfagaceae |
| spellingShingle | Xiao-Xiao Gao Feng Yan Meng Liu Saman Zulfiqar Peng Zhao The complete chloroplast genome sequence of an endemic species Pearl chestnut (Castanea henryi) Mitochondrial DNA. Part B. Resources castanea henryi chestnut chloroplast phylogenetic fagaceae |
| title | The complete chloroplast genome sequence of an endemic species Pearl chestnut (Castanea henryi) |
| title_full | The complete chloroplast genome sequence of an endemic species Pearl chestnut (Castanea henryi) |
| title_fullStr | The complete chloroplast genome sequence of an endemic species Pearl chestnut (Castanea henryi) |
| title_full_unstemmed | The complete chloroplast genome sequence of an endemic species Pearl chestnut (Castanea henryi) |
| title_short | The complete chloroplast genome sequence of an endemic species Pearl chestnut (Castanea henryi) |
| title_sort | complete chloroplast genome sequence of an endemic species pearl chestnut castanea henryi |
| topic | castanea henryi chestnut chloroplast phylogenetic fagaceae |
| url | http://dx.doi.org/10.1080/23802359.2018.1553522 |
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