Genomic Resources of Four Colletotrichum Species (C. fioriniae, C. chrysophilum, C. noveboracense, and C. nupharicola) Threatening Commercial Apple Production in the Eastern United States
The genus Colletotrichum includes nine major clades with 252 species and 15 major phylogenetic lineages, also known as species complexes. Colletotrichum spp. are one of the top fungal plant pathogens causing anthracnose and pre- and postharvest fruit rots worldwide. Apple orchards are imperiled by d...
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| Format: | Article |
| Language: | English |
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The American Phytopathological Society
2023-08-01
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| Series: | Molecular Plant-Microbe Interactions |
| Subjects: | |
| Online Access: | https://apsjournals.apsnet.org/doi/10.1094/MPMI-10-22-0204-A |
| _version_ | 1827819333262245888 |
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| author | Fatemeh Khodadadi Emily Giroux Guillaume J. Bilodeau Wayne M. Jurick Srđan G. Aćimović |
| author_facet | Fatemeh Khodadadi Emily Giroux Guillaume J. Bilodeau Wayne M. Jurick Srđan G. Aćimović |
| author_sort | Fatemeh Khodadadi |
| collection | DOAJ |
| description | The genus Colletotrichum includes nine major clades with 252 species and 15 major phylogenetic lineages, also known as species complexes. Colletotrichum spp. are one of the top fungal plant pathogens causing anthracnose and pre- and postharvest fruit rots worldwide. Apple orchards are imperiled by devastating losses from apple bitter rot, ranging from 24 to 98%, which is a serious disease caused by several Colletotrichum species. Bitter rot is also a major postharvest rot disease, with C. fioriniae causing from 2 to 14% of unmarketable fruit in commercial apple storages. Dominant species causing apple bitter rot in the Mid-Atlantic United States are C. fioriniae from the Colletotrichum acutatum species complex and C. chrysophilum and C. noveboracense from the C. gloeosporioides species complex (CGSC). C. fioriniae is the dominant species causing apple bitter rot in the Northeastern and Mid-Atlantic states. C. chrysophilum was first identified on banana and cashew but has been recently found as the second most dominant species causing apple bitter rot in the Mid-Atlantic. As the third most dominant pathogen, C. noveboracense MB 836581 was identified as a novel species in the CGSC, causing apple bitter rot in the Mid-Atlantic. C. nupharicola is a sister group to C. fructicola and C. noveboracense, also causing bitter rot on apple. We deliver the resources of 10 new genomes, including two isolates of C. fioriniae, three isolates of C. chrysophilum, three isolates of C. noveboracense, and two isolates of C. nupharicola collected from apple fruit, yellow waterlily, and Juglans nigra. [Graphic: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license. |
| first_indexed | 2024-03-12T01:13:33Z |
| format | Article |
| id | doaj.art-3d075ebe963a44b8aef4a53923170bba |
| institution | Directory Open Access Journal |
| issn | 0894-0282 1943-7706 |
| language | English |
| last_indexed | 2024-03-12T01:13:33Z |
| publishDate | 2023-08-01 |
| publisher | The American Phytopathological Society |
| record_format | Article |
| series | Molecular Plant-Microbe Interactions |
| spelling | doaj.art-3d075ebe963a44b8aef4a53923170bba2023-09-14T00:39:54ZengThe American Phytopathological SocietyMolecular Plant-Microbe Interactions0894-02821943-77062023-08-0136852953210.1094/MPMI-10-22-0204-AGenomic Resources of Four Colletotrichum Species (C. fioriniae, C. chrysophilum, C. noveboracense, and C. nupharicola) Threatening Commercial Apple Production in the Eastern United StatesFatemeh Khodadadi0Emily Giroux1Guillaume J. Bilodeau2Wayne M. Jurick3Srđan G. Aćimović4University of California Riverside, Department of Plant Pathology and Microbiology, Riverside, CA 92521, U.S.A.Pathogen Identification Research Laboratory, Ottawa Plant Laboratory, Canadian Food Inspection Agency, Ottawa, Ontario K2J 4S1, CanadaPathogen Identification Research Laboratory, Ottawa Plant Laboratory, Canadian Food Inspection Agency, Ottawa, Ontario K2J 4S1, CanadaFood Quality Laboratory, U.S. Department of Agriculture, Agriculture Research Service, Beltsville Agricultural Research Center, Beltsville, MD 20705, U.S.A.Virginia Polytechnic Institute and State University, School of Plant and Environmental Sciences, Alson H. Smith Jr. Agricultural Research and Extension Center, Winchester, VA 22602, U.S.A.The genus Colletotrichum includes nine major clades with 252 species and 15 major phylogenetic lineages, also known as species complexes. Colletotrichum spp. are one of the top fungal plant pathogens causing anthracnose and pre- and postharvest fruit rots worldwide. Apple orchards are imperiled by devastating losses from apple bitter rot, ranging from 24 to 98%, which is a serious disease caused by several Colletotrichum species. Bitter rot is also a major postharvest rot disease, with C. fioriniae causing from 2 to 14% of unmarketable fruit in commercial apple storages. Dominant species causing apple bitter rot in the Mid-Atlantic United States are C. fioriniae from the Colletotrichum acutatum species complex and C. chrysophilum and C. noveboracense from the C. gloeosporioides species complex (CGSC). C. fioriniae is the dominant species causing apple bitter rot in the Northeastern and Mid-Atlantic states. C. chrysophilum was first identified on banana and cashew but has been recently found as the second most dominant species causing apple bitter rot in the Mid-Atlantic. As the third most dominant pathogen, C. noveboracense MB 836581 was identified as a novel species in the CGSC, causing apple bitter rot in the Mid-Atlantic. C. nupharicola is a sister group to C. fructicola and C. noveboracense, also causing bitter rot on apple. We deliver the resources of 10 new genomes, including two isolates of C. fioriniae, three isolates of C. chrysophilum, three isolates of C. noveboracense, and two isolates of C. nupharicola collected from apple fruit, yellow waterlily, and Juglans nigra. [Graphic: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.https://apsjournals.apsnet.org/doi/10.1094/MPMI-10-22-0204-Aapple bitter rotColletotrichum acutatum species complexC. gloeosporioides species complexpreharvest fruit rotpostharvest fruit rot |
| spellingShingle | Fatemeh Khodadadi Emily Giroux Guillaume J. Bilodeau Wayne M. Jurick Srđan G. Aćimović Genomic Resources of Four Colletotrichum Species (C. fioriniae, C. chrysophilum, C. noveboracense, and C. nupharicola) Threatening Commercial Apple Production in the Eastern United States Molecular Plant-Microbe Interactions apple bitter rot Colletotrichum acutatum species complex C. gloeosporioides species complex preharvest fruit rot postharvest fruit rot |
| title | Genomic Resources of Four Colletotrichum Species (C. fioriniae, C. chrysophilum, C. noveboracense, and C. nupharicola) Threatening Commercial Apple Production in the Eastern United States |
| title_full | Genomic Resources of Four Colletotrichum Species (C. fioriniae, C. chrysophilum, C. noveboracense, and C. nupharicola) Threatening Commercial Apple Production in the Eastern United States |
| title_fullStr | Genomic Resources of Four Colletotrichum Species (C. fioriniae, C. chrysophilum, C. noveboracense, and C. nupharicola) Threatening Commercial Apple Production in the Eastern United States |
| title_full_unstemmed | Genomic Resources of Four Colletotrichum Species (C. fioriniae, C. chrysophilum, C. noveboracense, and C. nupharicola) Threatening Commercial Apple Production in the Eastern United States |
| title_short | Genomic Resources of Four Colletotrichum Species (C. fioriniae, C. chrysophilum, C. noveboracense, and C. nupharicola) Threatening Commercial Apple Production in the Eastern United States |
| title_sort | genomic resources of four colletotrichum species c fioriniae c chrysophilum c noveboracense and c nupharicola threatening commercial apple production in the eastern united states |
| topic | apple bitter rot Colletotrichum acutatum species complex C. gloeosporioides species complex preharvest fruit rot postharvest fruit rot |
| url | https://apsjournals.apsnet.org/doi/10.1094/MPMI-10-22-0204-A |
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