Complete chloroplast genome sequences of Debregeasia orientalis (Urticaceae)
Debregeasia orientalis is an economically and ecologically important species, which belongs to the genus Debregeasia within the family Urticaceae. The complete chloroplast genome size of D. orientalis is 155,894 bp in length, including a large single copy (LSC) region of 85,558 bp, a small single co...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1604186 |
| _version_ | 1827773459918225408 |
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| author | Ruo-Nan Wang Jie Liu Zhong-Hu Li Zeng-Yuan Wu |
| author_facet | Ruo-Nan Wang Jie Liu Zhong-Hu Li Zeng-Yuan Wu |
| author_sort | Ruo-Nan Wang |
| collection | DOAJ |
| description | Debregeasia orientalis is an economically and ecologically important species, which belongs to the genus Debregeasia within the family Urticaceae. The complete chloroplast genome size of D. orientalis is 155,894 bp in length, including a large single copy (LSC) region of 85,558 bp, a small single copy (SSC) region of 19,064 bp, and a pair of inverted repeats (IRs) of 25,636 bp. The genome contains 112 genes, including 78 protein-coding genes, 30 tRNA genes, and four rRNA genes. The GC content in chloroplast genome, LSC region, SSC region, and IR region were 36.3%, 34.0%, 29.4%, and 42.7%, respectively. A total of 15 species are used to construct the phylogenetic tree of Rosales, employing the maximum likelihood (ML), and the results showed that D. orientalis is closely related to Debregeasia saeneb. |
| first_indexed | 2024-03-11T13:23:22Z |
| format | Article |
| id | doaj.art-3dae217810804a149f31e51c38363a92 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:23:22Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-3dae217810804a149f31e51c38363a922023-11-03T10:06:45ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-01411830183110.1080/23802359.2019.16041861604186Complete chloroplast genome sequences of Debregeasia orientalis (Urticaceae)Ruo-Nan Wang0Jie Liu1Zhong-Hu Li2Zeng-Yuan Wu3Chinese Academy of SciencesChinese Academy of SciencesNorthwest UniversityChinese Academy of SciencesDebregeasia orientalis is an economically and ecologically important species, which belongs to the genus Debregeasia within the family Urticaceae. The complete chloroplast genome size of D. orientalis is 155,894 bp in length, including a large single copy (LSC) region of 85,558 bp, a small single copy (SSC) region of 19,064 bp, and a pair of inverted repeats (IRs) of 25,636 bp. The genome contains 112 genes, including 78 protein-coding genes, 30 tRNA genes, and four rRNA genes. The GC content in chloroplast genome, LSC region, SSC region, and IR region were 36.3%, 34.0%, 29.4%, and 42.7%, respectively. A total of 15 species are used to construct the phylogenetic tree of Rosales, employing the maximum likelihood (ML), and the results showed that D. orientalis is closely related to Debregeasia saeneb.http://dx.doi.org/10.1080/23802359.2019.1604186debregeasia orientalischloroplast genomephylogenetic tree |
| spellingShingle | Ruo-Nan Wang Jie Liu Zhong-Hu Li Zeng-Yuan Wu Complete chloroplast genome sequences of Debregeasia orientalis (Urticaceae) Mitochondrial DNA. Part B. Resources debregeasia orientalis chloroplast genome phylogenetic tree |
| title | Complete chloroplast genome sequences of Debregeasia orientalis (Urticaceae) |
| title_full | Complete chloroplast genome sequences of Debregeasia orientalis (Urticaceae) |
| title_fullStr | Complete chloroplast genome sequences of Debregeasia orientalis (Urticaceae) |
| title_full_unstemmed | Complete chloroplast genome sequences of Debregeasia orientalis (Urticaceae) |
| title_short | Complete chloroplast genome sequences of Debregeasia orientalis (Urticaceae) |
| title_sort | complete chloroplast genome sequences of debregeasia orientalis urticaceae |
| topic | debregeasia orientalis chloroplast genome phylogenetic tree |
| url | http://dx.doi.org/10.1080/23802359.2019.1604186 |
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