A Novel Distinct Genetic Variant of Tomato Torrado Virus with Substantially Shorter RNA1-Specific 3’Untranslated Region (3’UTR)
Tomato torrado virus (ToTV) induces severe systemic necrosis in <i>Solanum lycopersicum</i>. This work aimed at describing the genetic variability of necrosis-inducing ToTV-Wal’17 collected in 2017, derived from the ToTV-Wal’03 after long-term passages in plants. Sequence analyses of the...
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| Format: | Article |
| Language: | English |
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MDPI AG
2021-11-01
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| Series: | Plants |
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| Online Access: | https://www.mdpi.com/2223-7747/10/11/2454 |
| _version_ | 1797508645472174080 |
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| author | Marta Budziszewska Przemysław Wieczorek |
| author_facet | Marta Budziszewska Przemysław Wieczorek |
| author_sort | Marta Budziszewska |
| collection | DOAJ |
| description | Tomato torrado virus (ToTV) induces severe systemic necrosis in <i>Solanum lycopersicum</i>. This work aimed at describing the genetic variability of necrosis-inducing ToTV-Wal’17 collected in 2017, derived from the ToTV-Wal’03 after long-term passages in plants. Sequence analyses of the ToTV-Wal’17 indicated twenty-eight single nucleotide substitutions in coding sequence of both RNAs, twelve of which resulted in amino acid changes in viral polyproteins. Moreover the sequencing data revealed that the 3’UTR of ToTV-Wal’17 RNA1 was 394 nts shorter in comparison to Wal’03. The performed sequence analyses revealed that 3’UTR of RNA1 of ToTV-Wal’17 is the most divergent across all previously described European isolates. |
| first_indexed | 2024-03-10T05:07:42Z |
| format | Article |
| id | doaj.art-3dd87aa3196148cb84645464816b85a9 |
| institution | Directory Open Access Journal |
| issn | 2223-7747 |
| language | English |
| last_indexed | 2024-03-10T05:07:42Z |
| publishDate | 2021-11-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Plants |
| spelling | doaj.art-3dd87aa3196148cb84645464816b85a92023-11-23T01:06:00ZengMDPI AGPlants2223-77472021-11-011011245410.3390/plants10112454A Novel Distinct Genetic Variant of Tomato Torrado Virus with Substantially Shorter RNA1-Specific 3’Untranslated Region (3’UTR)Marta Budziszewska0Przemysław Wieczorek1Department of Molecular Biology and Biotechnology, Institute of Plant Protection—National Research Institute, Wegorka 20 Street, 60-318 Poznan, PolandDepartment of Molecular Biology and Biotechnology, Institute of Plant Protection—National Research Institute, Wegorka 20 Street, 60-318 Poznan, PolandTomato torrado virus (ToTV) induces severe systemic necrosis in <i>Solanum lycopersicum</i>. This work aimed at describing the genetic variability of necrosis-inducing ToTV-Wal’17 collected in 2017, derived from the ToTV-Wal’03 after long-term passages in plants. Sequence analyses of the ToTV-Wal’17 indicated twenty-eight single nucleotide substitutions in coding sequence of both RNAs, twelve of which resulted in amino acid changes in viral polyproteins. Moreover the sequencing data revealed that the 3’UTR of ToTV-Wal’17 RNA1 was 394 nts shorter in comparison to Wal’03. The performed sequence analyses revealed that 3’UTR of RNA1 of ToTV-Wal’17 is the most divergent across all previously described European isolates.https://www.mdpi.com/2223-7747/10/11/2454tomato torrado virusgenetic variability3’untranslated regionstandem repeats |
| spellingShingle | Marta Budziszewska Przemysław Wieczorek A Novel Distinct Genetic Variant of Tomato Torrado Virus with Substantially Shorter RNA1-Specific 3’Untranslated Region (3’UTR) Plants tomato torrado virus genetic variability 3’untranslated regions tandem repeats |
| title | A Novel Distinct Genetic Variant of Tomato Torrado Virus with Substantially Shorter RNA1-Specific 3’Untranslated Region (3’UTR) |
| title_full | A Novel Distinct Genetic Variant of Tomato Torrado Virus with Substantially Shorter RNA1-Specific 3’Untranslated Region (3’UTR) |
| title_fullStr | A Novel Distinct Genetic Variant of Tomato Torrado Virus with Substantially Shorter RNA1-Specific 3’Untranslated Region (3’UTR) |
| title_full_unstemmed | A Novel Distinct Genetic Variant of Tomato Torrado Virus with Substantially Shorter RNA1-Specific 3’Untranslated Region (3’UTR) |
| title_short | A Novel Distinct Genetic Variant of Tomato Torrado Virus with Substantially Shorter RNA1-Specific 3’Untranslated Region (3’UTR) |
| title_sort | novel distinct genetic variant of tomato torrado virus with substantially shorter rna1 specific 3 untranslated region 3 utr |
| topic | tomato torrado virus genetic variability 3’untranslated regions tandem repeats |
| url | https://www.mdpi.com/2223-7747/10/11/2454 |
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