A comprehensive review on genomic resources in medicinally and industrially important major spices for future breeding programs: Status, utility and challenges
In the global market, spices possess a high-value but low-volume commodities of commerce. The food industry depends largely on spices for taste, flavor, and therapeutic properties in replacement of cheap synthetic ones. The estimated growth rate for spices demand in the world is ∼3.19%. Since spices...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2023-01-01
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| Series: | Current Research in Food Science |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2665927123001478 |
| _version_ | 1797394808435638272 |
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| author | Parinita Das Tilak Chandra Ankita Negi Sarika Jaiswal Mir Asif Iquebal Anil Rai Dinesh Kumar |
| author_facet | Parinita Das Tilak Chandra Ankita Negi Sarika Jaiswal Mir Asif Iquebal Anil Rai Dinesh Kumar |
| author_sort | Parinita Das |
| collection | DOAJ |
| description | In the global market, spices possess a high-value but low-volume commodities of commerce. The food industry depends largely on spices for taste, flavor, and therapeutic properties in replacement of cheap synthetic ones. The estimated growth rate for spices demand in the world is ∼3.19%. Since spices grow in limited geographical regions, India is one of the leading producer of spices, contributing 25–30 percent of total world trade. Hitherto, there has been no comprehensive review of the genomic resources of industrially important major medicinal spices to overcome major impediments in varietal improvement and management. This review focuses on currently available genomic resources of 24 commercially significant spices, namely, Ajwain, Allspice, Asafoetida, Black pepper, Cardamom large, Cardamom small, Celery, Chillies, Cinnamon, Clove, Coriander, Cumin, Curry leaf, Dill seed, Fennel, Fenugreek, Garlic, Ginger, Mint, Nutmeg, Saffron, Tamarind, Turmeric and Vanilla. The advent of low-cost sequencing machines has contributed immensely to the voluminous data generation of these spices, cracking the complex genomic architecture, marker discovery, and understanding comparative and functional genomics. This review of spice genomics resources concludes the perspective and way forward to provide footprints by uncovering genome assemblies, sequencing and re-sequencing projects, transcriptome-based studies, non-coding RNA-mediated regulation, organelles-based resources, developed molecular markers, web resources, databases and AI-directed resources in candidate spices for enhanced breeding potential in them. Further, their integration with molecular breeding could be of immense use in formulating a strategy to protect and expand the production of the spices due to increased global demand. |
| first_indexed | 2024-03-09T00:25:05Z |
| format | Article |
| id | doaj.art-3e46e3c8611c49c884a19b413015fd24 |
| institution | Directory Open Access Journal |
| issn | 2665-9271 |
| language | English |
| last_indexed | 2024-03-09T00:25:05Z |
| publishDate | 2023-01-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Current Research in Food Science |
| spelling | doaj.art-3e46e3c8611c49c884a19b413015fd242023-12-12T04:36:01ZengElsevierCurrent Research in Food Science2665-92712023-01-017100579A comprehensive review on genomic resources in medicinally and industrially important major spices for future breeding programs: Status, utility and challengesParinita Das0Tilak Chandra1Ankita Negi2Sarika Jaiswal3Mir Asif Iquebal4Anil Rai5Dinesh Kumar6Division of Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, IndiaDivision of Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, IndiaDivision of Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, IndiaCorresponding author.; Division of Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, IndiaDivision of Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, IndiaDivision of Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, IndiaDivision of Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, IndiaIn the global market, spices possess a high-value but low-volume commodities of commerce. The food industry depends largely on spices for taste, flavor, and therapeutic properties in replacement of cheap synthetic ones. The estimated growth rate for spices demand in the world is ∼3.19%. Since spices grow in limited geographical regions, India is one of the leading producer of spices, contributing 25–30 percent of total world trade. Hitherto, there has been no comprehensive review of the genomic resources of industrially important major medicinal spices to overcome major impediments in varietal improvement and management. This review focuses on currently available genomic resources of 24 commercially significant spices, namely, Ajwain, Allspice, Asafoetida, Black pepper, Cardamom large, Cardamom small, Celery, Chillies, Cinnamon, Clove, Coriander, Cumin, Curry leaf, Dill seed, Fennel, Fenugreek, Garlic, Ginger, Mint, Nutmeg, Saffron, Tamarind, Turmeric and Vanilla. The advent of low-cost sequencing machines has contributed immensely to the voluminous data generation of these spices, cracking the complex genomic architecture, marker discovery, and understanding comparative and functional genomics. This review of spice genomics resources concludes the perspective and way forward to provide footprints by uncovering genome assemblies, sequencing and re-sequencing projects, transcriptome-based studies, non-coding RNA-mediated regulation, organelles-based resources, developed molecular markers, web resources, databases and AI-directed resources in candidate spices for enhanced breeding potential in them. Further, their integration with molecular breeding could be of immense use in formulating a strategy to protect and expand the production of the spices due to increased global demand.http://www.sciencedirect.com/science/article/pii/S2665927123001478SpicesGenomic resourcesGenome assemblyTranscriptomeNon-coding RNAsMolecular markers |
| spellingShingle | Parinita Das Tilak Chandra Ankita Negi Sarika Jaiswal Mir Asif Iquebal Anil Rai Dinesh Kumar A comprehensive review on genomic resources in medicinally and industrially important major spices for future breeding programs: Status, utility and challenges Current Research in Food Science Spices Genomic resources Genome assembly Transcriptome Non-coding RNAs Molecular markers |
| title | A comprehensive review on genomic resources in medicinally and industrially important major spices for future breeding programs: Status, utility and challenges |
| title_full | A comprehensive review on genomic resources in medicinally and industrially important major spices for future breeding programs: Status, utility and challenges |
| title_fullStr | A comprehensive review on genomic resources in medicinally and industrially important major spices for future breeding programs: Status, utility and challenges |
| title_full_unstemmed | A comprehensive review on genomic resources in medicinally and industrially important major spices for future breeding programs: Status, utility and challenges |
| title_short | A comprehensive review on genomic resources in medicinally and industrially important major spices for future breeding programs: Status, utility and challenges |
| title_sort | comprehensive review on genomic resources in medicinally and industrially important major spices for future breeding programs status utility and challenges |
| topic | Spices Genomic resources Genome assembly Transcriptome Non-coding RNAs Molecular markers |
| url | http://www.sciencedirect.com/science/article/pii/S2665927123001478 |
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