Dynamic properties of simulated brain network models and empirical resting-state data
Brain network models (BNMs) have become a promising theoretical framework for simulating signals that are representative of whole-brain activity such as resting-state fMRI. However, it has been difficult to compare the complex brain activity obtained from simulations to empirical data. Previous stud...
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| Format: | Article |
| Language: | English |
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The MIT Press
2019-02-01
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| Series: | Network Neuroscience |
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| Online Access: | https://www.mitpressjournals.org/doi/pdf/10.1162/netn_a_00070 |
| _version_ | 1817992525563035648 |
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| author | Amrit Kashyap Shella Keilholz |
| author_facet | Amrit Kashyap Shella Keilholz |
| author_sort | Amrit Kashyap |
| collection | DOAJ |
| description | Brain network models (BNMs) have become a promising theoretical framework for simulating signals that are representative of whole-brain activity such as resting-state fMRI. However, it has been difficult to compare the complex brain activity obtained from simulations to empirical data. Previous studies have used simple metrics to characterize coordination between regions such as functional connectivity. We extend this by applying various different dynamic analysis tools that are currently used to understand empirical resting-state fMRI (rs-fMRI) to the simulated data. We show that certain properties correspond to the structural connectivity input that is shared between the models, and certain dynamic properties relate more to the mathematical description of the brain network model. We conclude that the dynamic properties that explicitly examine patterns of signal as a function of time rather than spatial coordination between different brain regions in the rs-fMRI signal seem to provide the largest contrasts between different BNMs and the unknown empirical dynamical system. Our results will be useful in constraining and developing more realistic simulations of whole-brain activity. The development of more sophisticated models of the brain will allow us to address some of the most challenging questions in neuroscience, such as how the physical structure of the brain can give rise to behavior, consciousness, and memory. Our focus in this manuscript is on simulating the relatively slow brain signals that coordinate information transfer across large scales in the brain and that can be measured using fMRI. Previous measures used averaged measures of functional connectivity in the simulated brain signals to compare with the empirical signal. In order to extend previous findings, we use dynamic analysis techniques developed for these fMRI signals to understand more transient events that occur naturally during normal brain activity. We show that these dynamic properties are better in differentiating models from each other and from the measured brain activity. These results will be useful in constraining and developing more realistic simulations of whole-brain activity. |
| first_indexed | 2024-04-14T01:28:03Z |
| format | Article |
| id | doaj.art-3e7560527f2046c7988244e97647aeda |
| institution | Directory Open Access Journal |
| issn | 2472-1751 |
| language | English |
| last_indexed | 2024-04-14T01:28:03Z |
| publishDate | 2019-02-01 |
| publisher | The MIT Press |
| record_format | Article |
| series | Network Neuroscience |
| spelling | doaj.art-3e7560527f2046c7988244e97647aeda2022-12-22T02:20:20ZengThe MIT PressNetwork Neuroscience2472-17512019-02-013240542610.1162/netn_a_00070netn_a_00070Dynamic properties of simulated brain network models and empirical resting-state dataAmrit Kashyap0Shella Keilholz1Department of Biomedical Engineering, Georgia Tech and Emory University, Atlanta, GA, USADepartment of Biomedical Engineering, Georgia Tech and Emory University, Atlanta, GA, USABrain network models (BNMs) have become a promising theoretical framework for simulating signals that are representative of whole-brain activity such as resting-state fMRI. However, it has been difficult to compare the complex brain activity obtained from simulations to empirical data. Previous studies have used simple metrics to characterize coordination between regions such as functional connectivity. We extend this by applying various different dynamic analysis tools that are currently used to understand empirical resting-state fMRI (rs-fMRI) to the simulated data. We show that certain properties correspond to the structural connectivity input that is shared between the models, and certain dynamic properties relate more to the mathematical description of the brain network model. We conclude that the dynamic properties that explicitly examine patterns of signal as a function of time rather than spatial coordination between different brain regions in the rs-fMRI signal seem to provide the largest contrasts between different BNMs and the unknown empirical dynamical system. Our results will be useful in constraining and developing more realistic simulations of whole-brain activity. The development of more sophisticated models of the brain will allow us to address some of the most challenging questions in neuroscience, such as how the physical structure of the brain can give rise to behavior, consciousness, and memory. Our focus in this manuscript is on simulating the relatively slow brain signals that coordinate information transfer across large scales in the brain and that can be measured using fMRI. Previous measures used averaged measures of functional connectivity in the simulated brain signals to compare with the empirical signal. In order to extend previous findings, we use dynamic analysis techniques developed for these fMRI signals to understand more transient events that occur naturally during normal brain activity. We show that these dynamic properties are better in differentiating models from each other and from the measured brain activity. These results will be useful in constraining and developing more realistic simulations of whole-brain activity.https://www.mitpressjournals.org/doi/pdf/10.1162/netn_a_00070Resting-state fMRIBrain network modelingDynamicsDynamic functional connectivity |
| spellingShingle | Amrit Kashyap Shella Keilholz Dynamic properties of simulated brain network models and empirical resting-state data Network Neuroscience Resting-state fMRI Brain network modeling Dynamics Dynamic functional connectivity |
| title | Dynamic properties of simulated brain network models and empirical resting-state data |
| title_full | Dynamic properties of simulated brain network models and empirical resting-state data |
| title_fullStr | Dynamic properties of simulated brain network models and empirical resting-state data |
| title_full_unstemmed | Dynamic properties of simulated brain network models and empirical resting-state data |
| title_short | Dynamic properties of simulated brain network models and empirical resting-state data |
| title_sort | dynamic properties of simulated brain network models and empirical resting state data |
| topic | Resting-state fMRI Brain network modeling Dynamics Dynamic functional connectivity |
| url | https://www.mitpressjournals.org/doi/pdf/10.1162/netn_a_00070 |
| work_keys_str_mv | AT amritkashyap dynamicpropertiesofsimulatedbrainnetworkmodelsandempiricalrestingstatedata AT shellakeilholz dynamicpropertiesofsimulatedbrainnetworkmodelsandempiricalrestingstatedata |