The plastid genome of Vanillon (Vanilla pompona, Orchidaceae)
This study presents the complete sequence of Vanilla pompona chloroplast genome. This 148,009 bp long genome consist of 107 genes out of which 30 of them are tRNA, 4 rRNA. Fairly long inverted repeat regions (IR) and large single-copy (LSC) of length 29,807 and 86,358 bp, respectively, were detected...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2017-12-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2017.1383201 |
| _version_ | 1797640744879521792 |
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| author | Ali Amiryousefi Jaakko Hyvönen Péter Poczai |
| author_facet | Ali Amiryousefi Jaakko Hyvönen Péter Poczai |
| author_sort | Ali Amiryousefi |
| collection | DOAJ |
| description | This study presents the complete sequence of Vanilla pompona chloroplast genome. This 148,009 bp long genome consist of 107 genes out of which 30 of them are tRNA, 4 rRNA. Fairly long inverted repeat regions (IR) and large single-copy (LSC) of length 29,807 and 86,358 bp, respectively, were detected. This means an exceptionally short single-copy (SSC) region with only 2037 bp. This truncation of the SSC is due to multiple translocation of ndh genes to the mitochondrion as in majority of the Orchidaceae and especially in the genus Vanilla. The phylogeny presented here meaningfully places Vanillon within the orchid family. |
| first_indexed | 2024-03-11T13:36:12Z |
| format | Article |
| id | doaj.art-3eaa278667754b84a33de12c1ee7bfd4 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:36:12Z |
| publishDate | 2017-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-3eaa278667754b84a33de12c1ee7bfd42023-11-02T15:42:58ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-12-012268969110.1080/23802359.2017.13832011383201The plastid genome of Vanillon (Vanilla pompona, Orchidaceae)Ali Amiryousefi0Jaakko Hyvönen1Péter Poczai2University of HelsinkiViikki Plant Science Centre, University of HelsinkiUniversity of HelsinkiThis study presents the complete sequence of Vanilla pompona chloroplast genome. This 148,009 bp long genome consist of 107 genes out of which 30 of them are tRNA, 4 rRNA. Fairly long inverted repeat regions (IR) and large single-copy (LSC) of length 29,807 and 86,358 bp, respectively, were detected. This means an exceptionally short single-copy (SSC) region with only 2037 bp. This truncation of the SSC is due to multiple translocation of ndh genes to the mitochondrion as in majority of the Orchidaceae and especially in the genus Vanilla. The phylogeny presented here meaningfully places Vanillon within the orchid family.http://dx.doi.org/10.1080/23802359.2017.1383201chloroplast genomede novo assemblygenome skimmingphylogenomicsplastid evolution |
| spellingShingle | Ali Amiryousefi Jaakko Hyvönen Péter Poczai The plastid genome of Vanillon (Vanilla pompona, Orchidaceae) Mitochondrial DNA. Part B. Resources chloroplast genome de novo assembly genome skimming phylogenomics plastid evolution |
| title | The plastid genome of Vanillon (Vanilla pompona, Orchidaceae) |
| title_full | The plastid genome of Vanillon (Vanilla pompona, Orchidaceae) |
| title_fullStr | The plastid genome of Vanillon (Vanilla pompona, Orchidaceae) |
| title_full_unstemmed | The plastid genome of Vanillon (Vanilla pompona, Orchidaceae) |
| title_short | The plastid genome of Vanillon (Vanilla pompona, Orchidaceae) |
| title_sort | plastid genome of vanillon vanilla pompona orchidaceae |
| topic | chloroplast genome de novo assembly genome skimming phylogenomics plastid evolution |
| url | http://dx.doi.org/10.1080/23802359.2017.1383201 |
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