Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’
Toona ciliata var. pubescens is classified as Toona subgenus of Meliaceae family, which belongs to a large deciduous tree species. It is also a kind of precious timber tree species and has a certain medicinal value. Here, the first complete chloroplast genome (cpDNA) sequence of T. ciliata var. pube...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2022-03-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2022.2049987 |
| _version_ | 1827772227457646592 |
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| author | Zhuchou Lu Xin Dong Yanru Fan Wenjian Liu Jianhua Dai Xiaojiao Han Jun Liu |
| author_facet | Zhuchou Lu Xin Dong Yanru Fan Wenjian Liu Jianhua Dai Xiaojiao Han Jun Liu |
| author_sort | Zhuchou Lu |
| collection | DOAJ |
| description | Toona ciliata var. pubescens is classified as Toona subgenus of Meliaceae family, which belongs to a large deciduous tree species. It is also a kind of precious timber tree species and has a certain medicinal value. Here, the first complete chloroplast genome (cpDNA) sequence of T. ciliata var. pubescens was determined using the Illumina sequencing platform. The cpDNA genome is 159,481 bp in length, containing a large single-copy region (LSC) of 87,176 bp and a small single-copy region (SSC) of 18,381 bp, which were separated by a pair of inverted repeats (IRs) regions of 26,962 bp. The genome contains 138 genes, including 90 protein-coding genes, eight ribosomal RNA genes, and 40 transfer RNA genes. The phylogenetic analysis based on 19 cpDNA genomes showed a close relationship with Toona ciliate. |
| first_indexed | 2024-03-11T13:06:21Z |
| format | Article |
| id | doaj.art-3f22240718c74bbe841fd717669e00d3 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:06:21Z |
| publishDate | 2022-03-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-3f22240718c74bbe841fd717669e00d32023-11-03T14:36:02ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-03-017349549710.1080/23802359.2022.20499872049987Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’Zhuchou Lu0Xin Dong1Yanru Fan2Wenjian Liu3Jianhua Dai4Xiaojiao Han5Jun Liu6State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding of Zhejiang Province, Research Institute of Subtropical Forestry, Chinese Academy of ForestryState Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding of Zhejiang Province, Research Institute of Subtropical Forestry, Chinese Academy of ForestryState Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding of Zhejiang Province, Research Institute of Subtropical Forestry, Chinese Academy of ForestryState Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding of Zhejiang Province, Research Institute of Subtropical Forestry, Chinese Academy of ForestryState Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding of Zhejiang Province, Research Institute of Subtropical Forestry, Chinese Academy of ForestryState Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding of Zhejiang Province, Research Institute of Subtropical Forestry, Chinese Academy of ForestryState Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding of Zhejiang Province, Research Institute of Subtropical Forestry, Chinese Academy of ForestryToona ciliata var. pubescens is classified as Toona subgenus of Meliaceae family, which belongs to a large deciduous tree species. It is also a kind of precious timber tree species and has a certain medicinal value. Here, the first complete chloroplast genome (cpDNA) sequence of T. ciliata var. pubescens was determined using the Illumina sequencing platform. The cpDNA genome is 159,481 bp in length, containing a large single-copy region (LSC) of 87,176 bp and a small single-copy region (SSC) of 18,381 bp, which were separated by a pair of inverted repeats (IRs) regions of 26,962 bp. The genome contains 138 genes, including 90 protein-coding genes, eight ribosomal RNA genes, and 40 transfer RNA genes. The phylogenetic analysis based on 19 cpDNA genomes showed a close relationship with Toona ciliate.http://dx.doi.org/10.1080/23802359.2022.2049987meliaceaetoona ciliata var. pubescenschloroplast genomephylogenetic analysis |
| spellingShingle | Zhuchou Lu Xin Dong Yanru Fan Wenjian Liu Jianhua Dai Xiaojiao Han Jun Liu Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’ Mitochondrial DNA. Part B. Resources meliaceae toona ciliata var. pubescens chloroplast genome phylogenetic analysis |
| title | Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’ |
| title_full | Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’ |
| title_fullStr | Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’ |
| title_full_unstemmed | Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’ |
| title_short | Complete chloroplast genome of Toona ciliata Roem. var. pubescens (Franch.) Hand.-Mazz (Meliaceae), ‘Chinese mahogany’ |
| title_sort | complete chloroplast genome of toona ciliata roem var pubescens franch hand mazz meliaceae chinese mahogany |
| topic | meliaceae toona ciliata var. pubescens chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2022.2049987 |
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