The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis
Atractylodes koreana (Nakai) Kitam is a perennial herb of Asteraceae, mainly distributed in China and Korea, which is the main adulterant of traditional herbal medicine ‘Cangzhu’. In the present study, we reported the complete chloroplast (cp) genome of A. koreana with the total length of 153,232 bp...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1928561 |
| _version_ | 1797638854430162944 |
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| author | Hongbo Xie Mengmeng Shi Linchun Shi Jinxin Liu Chunying Zhao |
| author_facet | Hongbo Xie Mengmeng Shi Linchun Shi Jinxin Liu Chunying Zhao |
| author_sort | Hongbo Xie |
| collection | DOAJ |
| description | Atractylodes koreana (Nakai) Kitam is a perennial herb of Asteraceae, mainly distributed in China and Korea, which is the main adulterant of traditional herbal medicine ‘Cangzhu’. In the present study, we reported the complete chloroplast (cp) genome of A. koreana with the total length of 153,232 bp, which is consisted of four regions, including one large single copy (LSC) region of 84,250 bp, one small single copy (SSC) region of 18,690 bp, and two inverted repeat regions (IRa and IRb) of 25,146 bp. The GC content of the complete cp genome is 37.7%. A total of 110 unique genes were annotated, comprising 79 protein-coding genes, 27 transfer RNA (tRNA) genes and four ribosome RNA (rRNA) genes. Moreover, nine protein-coding genes contained one intron and three protein-coding genes (clpP, ycf3, and rps12) contained two introns. The phylogenetic analysis indicated that A. koreana is a sister group of A. chinensis and A. lancea. |
| first_indexed | 2024-03-11T13:08:25Z |
| format | Article |
| id | doaj.art-3f32a199823e4bc083eb6c5244cea515 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:08:25Z |
| publishDate | 2021-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-3f32a199823e4bc083eb6c5244cea5152023-11-03T14:16:11ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-07-01672041204310.1080/23802359.2021.19285611928561The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysisHongbo Xie0Mengmeng Shi1Linchun Shi2Jinxin Liu3Chunying Zhao4Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical UniversityHebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical UniversityInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical CollegeHebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical UniversityHebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical UniversityAtractylodes koreana (Nakai) Kitam is a perennial herb of Asteraceae, mainly distributed in China and Korea, which is the main adulterant of traditional herbal medicine ‘Cangzhu’. In the present study, we reported the complete chloroplast (cp) genome of A. koreana with the total length of 153,232 bp, which is consisted of four regions, including one large single copy (LSC) region of 84,250 bp, one small single copy (SSC) region of 18,690 bp, and two inverted repeat regions (IRa and IRb) of 25,146 bp. The GC content of the complete cp genome is 37.7%. A total of 110 unique genes were annotated, comprising 79 protein-coding genes, 27 transfer RNA (tRNA) genes and four ribosome RNA (rRNA) genes. Moreover, nine protein-coding genes contained one intron and three protein-coding genes (clpP, ycf3, and rps12) contained two introns. The phylogenetic analysis indicated that A. koreana is a sister group of A. chinensis and A. lancea.http://dx.doi.org/10.1080/23802359.2021.1928561atractylodes koreanamedicinal plantchloroplast genomeasteraceaephylogenetic relationship |
| spellingShingle | Hongbo Xie Mengmeng Shi Linchun Shi Jinxin Liu Chunying Zhao The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis Mitochondrial DNA. Part B. Resources atractylodes koreana medicinal plant chloroplast genome asteraceae phylogenetic relationship |
| title | The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis |
| title_full | The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis |
| title_fullStr | The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis |
| title_full_unstemmed | The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis |
| title_short | The complete chloroplast genome of Atractylodes koreana (Nakai) Kitam and its phylogenetic analysis |
| title_sort | complete chloroplast genome of atractylodes koreana nakai kitam and its phylogenetic analysis |
| topic | atractylodes koreana medicinal plant chloroplast genome asteraceae phylogenetic relationship |
| url | http://dx.doi.org/10.1080/23802359.2021.1928561 |
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