The complete chloroplast genome of the endangered plant Paphiopedilum wardii (Orchidaceae)
Chloroplast (cp) genome sequences provide a valuable source for phylogenetic analysis, which becomes a popular tool for population and phylogeny in a recent report. Here, the complete chloroplast genome of the Paphiopedilum wardii has been reconstructed from the whole-genome Illumina sequencing data...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1532352 |
| _version_ | 1827774117933219840 |
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| author | Lin Wang Changhai Sui Ying Wang Jia Guo |
| author_facet | Lin Wang Changhai Sui Ying Wang Jia Guo |
| author_sort | Lin Wang |
| collection | DOAJ |
| description | Chloroplast (cp) genome sequences provide a valuable source for phylogenetic analysis, which becomes a popular tool for population and phylogeny in a recent report. Here, the complete chloroplast genome of the Paphiopedilum wardii has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 169,820 bp in size and comprises a pair of inverted repeat (IR) regions of 33,641 bp each, a large single-copy (LSC) region of 98,872 bp and a small single-copy (SSC) region of 3666 bp. The total GC content is 33.8%, while the corresponding values of the IR regions, LSC, and SSC and are 38.7%, 31.7% and 26.7%, respectively. The chloroplast genome contains 151 genes, including 91 protein-coding genes, eight ribosomal RNA genes and 52 transfer RNA genes. Two genes (ndhA and ndhB) are pseudogenized or lost in its cpDNA. The maximum-likelihood phylogenetic analysis showed a close relationship with P. armeniacum in Orchidaceae. Our findings provide useful information for phylogenetic and evolutionary research of Paphiopedilum species. |
| first_indexed | 2024-03-11T13:34:13Z |
| format | Article |
| id | doaj.art-3f8003a5f2514f28a744d0e3e4f2f957 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:34:13Z |
| publishDate | 2018-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-3f8003a5f2514f28a744d0e3e4f2f9572023-11-02T15:57:27ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-07-01321256125810.1080/23802359.2018.15323521532352The complete chloroplast genome of the endangered plant Paphiopedilum wardii (Orchidaceae)Lin Wang0Changhai Sui1Ying Wang2Jia Guo3Jilin Engineering Vocational CollegeJilin Engineering Vocational CollegeSchool of Food Production Technology and Biotechnology, Changchun Vocational Institute of TechnologyAgro-Biotechnology Research Institute, Jilin Academy of Agricultural SciencesChloroplast (cp) genome sequences provide a valuable source for phylogenetic analysis, which becomes a popular tool for population and phylogeny in a recent report. Here, the complete chloroplast genome of the Paphiopedilum wardii has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 169,820 bp in size and comprises a pair of inverted repeat (IR) regions of 33,641 bp each, a large single-copy (LSC) region of 98,872 bp and a small single-copy (SSC) region of 3666 bp. The total GC content is 33.8%, while the corresponding values of the IR regions, LSC, and SSC and are 38.7%, 31.7% and 26.7%, respectively. The chloroplast genome contains 151 genes, including 91 protein-coding genes, eight ribosomal RNA genes and 52 transfer RNA genes. Two genes (ndhA and ndhB) are pseudogenized or lost in its cpDNA. The maximum-likelihood phylogenetic analysis showed a close relationship with P. armeniacum in Orchidaceae. Our findings provide useful information for phylogenetic and evolutionary research of Paphiopedilum species.http://dx.doi.org/10.1080/23802359.2018.1532352paphiopedilum wardiiillumina sequencingchloroplast genomemitobim |
| spellingShingle | Lin Wang Changhai Sui Ying Wang Jia Guo The complete chloroplast genome of the endangered plant Paphiopedilum wardii (Orchidaceae) Mitochondrial DNA. Part B. Resources paphiopedilum wardii illumina sequencing chloroplast genome mitobim |
| title | The complete chloroplast genome of the endangered plant Paphiopedilum wardii (Orchidaceae) |
| title_full | The complete chloroplast genome of the endangered plant Paphiopedilum wardii (Orchidaceae) |
| title_fullStr | The complete chloroplast genome of the endangered plant Paphiopedilum wardii (Orchidaceae) |
| title_full_unstemmed | The complete chloroplast genome of the endangered plant Paphiopedilum wardii (Orchidaceae) |
| title_short | The complete chloroplast genome of the endangered plant Paphiopedilum wardii (Orchidaceae) |
| title_sort | complete chloroplast genome of the endangered plant paphiopedilum wardii orchidaceae |
| topic | paphiopedilum wardii illumina sequencing chloroplast genome mitobim |
| url | http://dx.doi.org/10.1080/23802359.2018.1532352 |
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