The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female
The chloroplast (cp) genome sequence of a gynodioecious Satyrium ciliatum female type has been characterized using Illumina pair-end sequencing. The complete cp genome was 154,418 bp in length, containing a large single copy region (LSC) of 83,475 bp and a small single copy region (SSC) of 17,513 bp...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1687359 |
| _version_ | 1797639555785949184 |
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| author | Xiaokai Ma Han Lin Yanqiong Chen Siren Lan Ray Ming |
| author_facet | Xiaokai Ma Han Lin Yanqiong Chen Siren Lan Ray Ming |
| author_sort | Xiaokai Ma |
| collection | DOAJ |
| description | The chloroplast (cp) genome sequence of a gynodioecious Satyrium ciliatum female type has been characterized using Illumina pair-end sequencing. The complete cp genome was 154,418 bp in length, containing a large single copy region (LSC) of 83,475 bp and a small single copy region (SSC) of 17,513 bp, which were separated by a pair of 26,715 bp inverted repeat regions (IRs). The genome contained 132 genes, with 113 unique genes, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The overall GC content is 37.18% with the values of the LSC, SSC, and IR regions are 34.90%, 30.15%, and 43.06%, respectively. Phylogenetic analysis suggested that the S. ciliatum is close to Platanthera japonica (MG925368) in subfamily Orchidoideae. |
| first_indexed | 2024-03-11T13:19:24Z |
| format | Article |
| id | doaj.art-414c0763cca74d1cbcde614d5bb6d486 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:24Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-414c0763cca74d1cbcde614d5bb6d4862023-11-03T10:38:51ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01423876387710.1080/23802359.2019.16873591687359The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) femaleXiaokai Ma0Han Lin1Yanqiong Chen2Siren Lan3Ray Ming4Fujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityFujian Agriculture and Forestry UniversityThe chloroplast (cp) genome sequence of a gynodioecious Satyrium ciliatum female type has been characterized using Illumina pair-end sequencing. The complete cp genome was 154,418 bp in length, containing a large single copy region (LSC) of 83,475 bp and a small single copy region (SSC) of 17,513 bp, which were separated by a pair of 26,715 bp inverted repeat regions (IRs). The genome contained 132 genes, with 113 unique genes, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The overall GC content is 37.18% with the values of the LSC, SSC, and IR regions are 34.90%, 30.15%, and 43.06%, respectively. Phylogenetic analysis suggested that the S. ciliatum is close to Platanthera japonica (MG925368) in subfamily Orchidoideae.http://dx.doi.org/10.1080/23802359.2019.1687359satyrium ciliatumgynodioecyplastid genomephylogenyorchid |
| spellingShingle | Xiaokai Ma Han Lin Yanqiong Chen Siren Lan Ray Ming The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female Mitochondrial DNA. Part B. Resources satyrium ciliatum gynodioecy plastid genome phylogeny orchid |
| title | The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female |
| title_full | The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female |
| title_fullStr | The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female |
| title_full_unstemmed | The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female |
| title_short | The complete chloroplast genome of a gynodioecious deciduous orchid Satyrium ciliatum (Orchidaceae) female |
| title_sort | complete chloroplast genome of a gynodioecious deciduous orchid satyrium ciliatum orchidaceae female |
| topic | satyrium ciliatum gynodioecy plastid genome phylogeny orchid |
| url | http://dx.doi.org/10.1080/23802359.2019.1687359 |
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