ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data
Metagenomic Hi-C enables genome retrieval in microbial samples. Here, the authors develop an integrative method to recover complete viral genomes and detect virus-host pairs using metagenomic Hi-C data.
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
| Published: |
Nature Portfolio
2023-01-01
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| Series: | Nature Communications |
| Online Access: | https://doi.org/10.1038/s41467-023-35945-y |
| _version_ | 1811171619592208384 |
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| author | Yuxuan Du Jed A. Fuhrman Fengzhu Sun |
| author_facet | Yuxuan Du Jed A. Fuhrman Fengzhu Sun |
| author_sort | Yuxuan Du |
| collection | DOAJ |
| description | Metagenomic Hi-C enables genome retrieval in microbial samples. Here, the authors develop an integrative method to recover complete viral genomes and detect virus-host pairs using metagenomic Hi-C data. |
| first_indexed | 2024-04-10T17:17:06Z |
| format | Article |
| id | doaj.art-41e7addd345e4718be009f0d3d818400 |
| institution | Directory Open Access Journal |
| issn | 2041-1723 |
| language | English |
| last_indexed | 2024-04-10T17:17:06Z |
| publishDate | 2023-01-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Nature Communications |
| spelling | doaj.art-41e7addd345e4718be009f0d3d8184002023-02-05T12:17:57ZengNature PortfolioNature Communications2041-17232023-01-0114111110.1038/s41467-023-35945-yViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C dataYuxuan Du0Jed A. Fuhrman1Fengzhu Sun2Department of Quantitative and Computational Biology, University of Southern CaliforniaDepartment of Biological Sciences, University of Southern CaliforniaDepartment of Quantitative and Computational Biology, University of Southern CaliforniaMetagenomic Hi-C enables genome retrieval in microbial samples. Here, the authors develop an integrative method to recover complete viral genomes and detect virus-host pairs using metagenomic Hi-C data.https://doi.org/10.1038/s41467-023-35945-y |
| spellingShingle | Yuxuan Du Jed A. Fuhrman Fengzhu Sun ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data Nature Communications |
| title | ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data |
| title_full | ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data |
| title_fullStr | ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data |
| title_full_unstemmed | ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data |
| title_short | ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data |
| title_sort | viralcc retrieves complete viral genomes and virus host pairs from metagenomic hi c data |
| url | https://doi.org/10.1038/s41467-023-35945-y |
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