FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries

FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries

<p>Abstract</p> <p>Background</p> <p>High-throughput sequencing makes it possible to rapidly obtain thousands of 16S rDNA sequences from environmental samples. Bioinformatic tools for the analyses of large 16S rDNA sequence databases are needed to comprehensively descri...

Full description

Bibliographic Details
Main Authors:	McNairnie Pat, Breitbart Mya, Yu Yanan, Rohwer Forest
Format:	Article
Language:	English
Published:	BMC 2006-02-01
Series:	BMC Bioinformatics
Online Access:	http://www.biomedcentral.com/1471-2105/7/57

Similar Items

FastGroup: A program to dereplicate libraries of 16S rDNA sequences
by: Rohwer Forest, et al.
Published: (2001-10-01)

PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information
by: Salamon Peter, et al.
Published: (2005-03-01)

Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing
by: Mya Breitbart, et al.
Published: (2005-11-01)

Benchmarking and Validation of a Bioinformatics Workflow for Meat Species Identification Using 16S rDNA Metabarcoding
by: Grégoire Denay, et al.
Published: (2023-02-01)

Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression.
by: Lauren McDaniel, et al.
Published: (2008-09-01)

Automated Microbial Library Generation Using the Bioinformatics Platform IDBac
by: Chase M. Clark, et al.
Published: (2022-03-01)

18S rDNA amplicon sequence data (V1–V3) of the Palmyra Atoll National Wildlife Refuge, Central Pacific
by: Brendan N. Reid, et al.
Published: (2022-04-01)

Molecular analysis of the mitochondrial markers COI, 12S rDNA and 16S rDNA for six species of Iranian scorpions
by: Parisa Soltan-Alinejad, et al.
Published: (2021-02-01)

T-Cloning Vector for Plasmid-Based 16S rDNA Analysis
by: Christian Pitulle, et al.
Published: (1999-02-01)

Do calcifying nanoparticles really contain 16S rDNA?
by: Shiekh FA
Published: (2012-09-01)

Optimizing the Use of Solid-Phase Reversible Immobilization Beads for High-Throughput Full-Length 16S rDNA Sequencing Library Construction
by: Yinmei Li, et al.
Published: (2023-09-01)

Microbiota in Human Periodontal Abscess Revealed by 16S rDNA Sequencing
by: Jiazhen Chen, et al.
Published: (2019-07-01)

16S rDNA sequencing and metadata of Dutch dental unit water
by: Michel A. Hoogenkamp, et al.
Published: (2021-08-01)

Analysis of the unexplored features of <it>rrs </it>(16S rDNA) of the Genus <it>Clostridium</it>
by: Shankar Pratap, et al.
Published: (2011-01-01)

Assessment of four DNA fragments (COI, 16S rDNA, ITS2, 12S rDNA) for species identification of the Ixodida (Acari: Ixodida)
by: Jizhou Lv, et al.
Published: (2014-03-01)

Genomic species identification of acinetobacter of clinical isolates by 16S rDNA sequencing
by: Misbah, S., et al.
Published: (2005)

Characterization of Intestinal Flora in Osteoporosis Patients Based on 16S rDNA Sequencing
by: Sun M, et al.
Published: (2024-09-01)

Genomic and Haplotype Comparison of Butanol Producing Bacteria Based on 16S rDNA
by: Ekwan Nofa Wiratno, et al.
Published: (2016-04-01)

Molecular Characterization of Dermanyssus gallinae in Türkiye Based on 16S and 18S rDNA
by: Nafiye Koç İnak
Published: (2023-12-01)

Evaluation of 16S rDNA-based community profiling for human microbiome research.
by: Jumpstart Consortium Human Microbiome Project Data Generation Working Group
Published: (2012-01-01)

Comparing the Potential for Identification of Lactobacillus spp. of 16S rDNA Variable Regions
by: Diego Mauricio Riaño-Pachón, et al.
Published: (2013-05-01)

A comparison of conventional and miniprimer PCR to elucidate bacteria diversity in Malaysia Ulu Slim hot spring using 16S rDNA clone library
by: Goh, Kian Mau, et al.
Published: (2011)

Identificarion of contaminant bacteria in cachaça yeast by 16s rDNA gene sequencing Identificação de bactérias contaminantes de fermento de cachaça por seqüenciamento do gene 16s rDNA
by: Osmar Vaz de Carvalho-Netto, et al.
Published: (2008-01-01)

DNA Detectives: Outreach activity teaching students to identify fish eggs using DNA barcoding
by: Makenzie Kerr, et al.
Published: (2021-01-01)

PIBAS FedSPARQL: a web-based platform for integration and exploration of bioinformatics datasets
by: Marija Djokic-Petrovic, et al.
Published: (2017-09-01)

Quantitative Analysis of 16S rDNA Using Competitive PCR and the QPCR™ System 5000
by: Herman J. Blok, et al.
Published: (1997-04-01)

ITS and 16S rDNA metagenomic dataset of different soils from flax fields
by: Daiana A. Zhernova, et al.
Published: (2024-02-01)

High-throughput 16S rDNA sequencing of the pulmonary microbiome of rats with allergic asthma
by: Yang Xiong, et al.
Published: (2020-06-01)

Effects of 16S rDNA sampling on estimates of the number of endosymbiont lineages in sucking lice
by: Julie M. Allen, et al.
Published: (2016-07-01)

Pathogen causing Phalaenopsis soft rot disease - 16S rDNA and virulence characterisation
by: Sudarsono Sudarsono, et al.
Published: (2018-03-01)

Comparison of FTIR and 16S rDNA sequencing methods for identification and taxonomy of methylotroph bacteria
by: Isaac Zamani, et al.
Published: (2014-01-01)

The Comparison of Biochemical and Sequencing 16S rDNA Gene Methods to Identify Nontuberculous Mycobacteria
by: Shafipour1, M., et al.
Published: (2014-11-01)

Homogeneity of the 16S rDNA sequence among geographically disparate isolates of <it>Taylorella equigenitalis</it>
by: Moore JE, et al.
Published: (2006-01-01)

Microbial diversity of bovine mastitic milk as described by pyrosequencing of metagenomic 16s rDNA.
by: Georgios Oikonomou, et al.
Published: (2012-01-01)

Comparative molecular analysis of Herbaspirillum strains by RAPD, RFLP, and 16S rDNA sequencing
by: Juliana R.L. Soares-Ramos, et al.
Published: (2003-12-01)

Metagenomics of pasteurized and unpasteurized gouda cheese using targeted 16S rDNA sequencing
by: Joelle K. Salazar, et al.
Published: (2018-11-01)

Phylogenetic analysis of flatfish (Order Pleuronectiformes) based on mitochondrial 16s rDNA sequences
by: Belén G. Pardo, et al.
Published: (2005-12-01)

16S rDNA droplet digital PCR for monitoring bacterial DNAemia in bloodstream infections.
by: Ingrid Ziegler, et al.
Published: (2019-01-01)

Application of 18S rDNA Clone Library to Detect Diatom Population Diversity in Dianchi#br#
by: HU Die, PI Zhi-yun, ZHANG Zhi-rong,et al
Published: (2019-08-01)

Microbiota shifts in fracture-related infections and pathogenic transitions identified by 16S rDNA sequencing
by: Sukpanichyingyong, S, et al.
Published: (2025)