Detection and Cloning of a Gene Involved in Zwitermicin A Synthesis from Plant Growth Promoting Rhizobacteria of Bacillus sp CR64
Utilization of soil bacteria as biocontrol agent is becoming popular due to its valuable and effective mechanisms to suppress plant pathogenic microbes. We have previously isolated Bacillus sp, designated as Bacillus sp CR64, which exhibited effective plant growth promoting and antifungal activities...
| Main Authors: | , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Universitas Gadjah Mada, Yogyakarta
2015-11-01
|
| Series: | Indonesian Journal of Biotechnology |
| Online Access: | http://journal.ugm.ac.id/ijbiotech/article/view/7818 |
| _version_ | 1818061861847826432 |
|---|---|
| author | Aris Tri Wahyudi Rika Indri Astuti Nisa Rachmania Mubarik Sarah Asih Faulina |
| author_facet | Aris Tri Wahyudi Rika Indri Astuti Nisa Rachmania Mubarik Sarah Asih Faulina |
| author_sort | Aris Tri Wahyudi |
| collection | DOAJ |
| description | Utilization of soil bacteria as biocontrol agent is becoming popular due to its valuable and effective mechanisms to suppress plant pathogenic microbes. We have previously isolated Bacillus sp, designated as Bacillus sp CR64, which exhibited effective plant growth promoting and antifungal activities. In this study, CR64 was examined in inhibiting the growth of Rhizoctonia solani, the causing agent of root rot disease. Partial sequence analysis of 16S rRNA gene revealed that this isolate similar with Bacillus cereus (94%). Furthermore, a gene designated zmaR was detected by means of specific amplification of DNA fragment approximately 950 bp. This fragment was then cloned onto pCRII-TOPO (3.9 kb) and sequenced using DNA sequencer ABI PRISM 310. Sequence analysis revealed that it had highest homology with the ZmaR protein (89% identity; 90% similarity) of B. thuringiensis serovar kurstaki (AAF82729.2). Alignment analysis with other ZmaR sequences from other antibiotic-producing Bacilli exhibited an almost fully conserved region within ZmaR sequences.<br /><br />Key words : PGPR, Bacillus sp CR64, Zwitermicin A, Cloning, Antifungal. |
| first_indexed | 2024-12-10T13:55:03Z |
| format | Article |
| id | doaj.art-4377999f550c4fb28d12c85f06e205e3 |
| institution | Directory Open Access Journal |
| issn | 0853-8654 2089-2241 |
| language | English |
| last_indexed | 2024-12-10T13:55:03Z |
| publishDate | 2015-11-01 |
| publisher | Universitas Gadjah Mada, Yogyakarta |
| record_format | Article |
| series | Indonesian Journal of Biotechnology |
| spelling | doaj.art-4377999f550c4fb28d12c85f06e205e32022-12-22T01:46:00ZengUniversitas Gadjah Mada, YogyakartaIndonesian Journal of Biotechnology0853-86542089-22412015-11-011516534Detection and Cloning of a Gene Involved in Zwitermicin A Synthesis from Plant Growth Promoting Rhizobacteria of Bacillus sp CR64Aris Tri WahyudiRika Indri AstutiNisa Rachmania MubarikSarah Asih FaulinaUtilization of soil bacteria as biocontrol agent is becoming popular due to its valuable and effective mechanisms to suppress plant pathogenic microbes. We have previously isolated Bacillus sp, designated as Bacillus sp CR64, which exhibited effective plant growth promoting and antifungal activities. In this study, CR64 was examined in inhibiting the growth of Rhizoctonia solani, the causing agent of root rot disease. Partial sequence analysis of 16S rRNA gene revealed that this isolate similar with Bacillus cereus (94%). Furthermore, a gene designated zmaR was detected by means of specific amplification of DNA fragment approximately 950 bp. This fragment was then cloned onto pCRII-TOPO (3.9 kb) and sequenced using DNA sequencer ABI PRISM 310. Sequence analysis revealed that it had highest homology with the ZmaR protein (89% identity; 90% similarity) of B. thuringiensis serovar kurstaki (AAF82729.2). Alignment analysis with other ZmaR sequences from other antibiotic-producing Bacilli exhibited an almost fully conserved region within ZmaR sequences.<br /><br />Key words : PGPR, Bacillus sp CR64, Zwitermicin A, Cloning, Antifungal.http://journal.ugm.ac.id/ijbiotech/article/view/7818 |
| spellingShingle | Aris Tri Wahyudi Rika Indri Astuti Nisa Rachmania Mubarik Sarah Asih Faulina Detection and Cloning of a Gene Involved in Zwitermicin A Synthesis from Plant Growth Promoting Rhizobacteria of Bacillus sp CR64 Indonesian Journal of Biotechnology |
| title | Detection and Cloning of a Gene Involved in Zwitermicin A Synthesis from Plant Growth Promoting Rhizobacteria of Bacillus sp CR64 |
| title_full | Detection and Cloning of a Gene Involved in Zwitermicin A Synthesis from Plant Growth Promoting Rhizobacteria of Bacillus sp CR64 |
| title_fullStr | Detection and Cloning of a Gene Involved in Zwitermicin A Synthesis from Plant Growth Promoting Rhizobacteria of Bacillus sp CR64 |
| title_full_unstemmed | Detection and Cloning of a Gene Involved in Zwitermicin A Synthesis from Plant Growth Promoting Rhizobacteria of Bacillus sp CR64 |
| title_short | Detection and Cloning of a Gene Involved in Zwitermicin A Synthesis from Plant Growth Promoting Rhizobacteria of Bacillus sp CR64 |
| title_sort | detection and cloning of a gene involved in zwitermicin a synthesis from plant growth promoting rhizobacteria of bacillus sp cr64 |
| url | http://journal.ugm.ac.id/ijbiotech/article/view/7818 |
| work_keys_str_mv | AT aristriwahyudi detectionandcloningofageneinvolvedinzwitermicinasynthesisfromplantgrowthpromotingrhizobacteriaofbacillusspcr64 AT rikaindriastuti detectionandcloningofageneinvolvedinzwitermicinasynthesisfromplantgrowthpromotingrhizobacteriaofbacillusspcr64 AT nisarachmaniamubarik detectionandcloningofageneinvolvedinzwitermicinasynthesisfromplantgrowthpromotingrhizobacteriaofbacillusspcr64 AT sarahasihfaulina detectionandcloningofageneinvolvedinzwitermicinasynthesisfromplantgrowthpromotingrhizobacteriaofbacillusspcr64 |