The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China

Clerodendrum lindleyi Decne. ex Planch. is a Chinese medicinal plant in the Lingnan region of China. In this study, the complete chloroplast genome sequence of C. lindleyi was assembled and characterized from high-throughput sequencing data. The chloroplast genome is 151,678 bp in length, consisting...

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Main Authors: Jingxin Chen, Jiayu Chen, Long Wang, Yucheng Zhao, Minjian Qin
Format: Article
Language:English
Published: Taylor & Francis Group 2021-11-01
Series:Mitochondrial DNA. Part B. Resources
Subjects:
Online Access:http://dx.doi.org/10.1080/23802359.2021.1981785
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author Jingxin Chen
Jiayu Chen
Long Wang
Yucheng Zhao
Minjian Qin
author_facet Jingxin Chen
Jiayu Chen
Long Wang
Yucheng Zhao
Minjian Qin
author_sort Jingxin Chen
collection DOAJ
description Clerodendrum lindleyi Decne. ex Planch. is a Chinese medicinal plant in the Lingnan region of China. In this study, the complete chloroplast genome sequence of C. lindleyi was assembled and characterized from high-throughput sequencing data. The chloroplast genome is 151,678 bp in length, consisting of a large single-copy (LSC) and a small single-copy (SSC) regions of 83,043 bp and 17,311 bp, respectively, which are separated by a pair of 25,662 bp inverted repeat (IR) regions. The overall GC content of the genome is 38.18%. The genome contains 133 genes, including 88 protein-coding, 37 tRNA, and 8 rRNA genes. A phylogenetic tree reconstructed by using 16 chloroplast genomes reveals that C. lindleyi is most closely related to C. trichotomum which together forms a group that is a sister to genus Caryopteris. The work reported here is the first complete chloroplast genome of C. lindleyi which will provide useful information to the evolutionary studies on the genus of Clerodendrum.
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spelling doaj.art-44271e8442bd455d91ac0cc41d5366a22023-11-03T14:28:31ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-11-016113098309910.1080/23802359.2021.19817851981785The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, ChinaJingxin Chen0Jiayu Chen1Long Wang2Yucheng Zhao3Minjian Qin4School of Traditional Chinese Medicine, China Pharmaceutical UniversityDepartment of Social Sciences, China Medical UniversitySchool of Traditional Chinese Medicine, China Pharmaceutical UniversitySchool of Traditional Chinese Medicine, China Pharmaceutical UniversitySchool of Traditional Chinese Medicine, China Pharmaceutical UniversityClerodendrum lindleyi Decne. ex Planch. is a Chinese medicinal plant in the Lingnan region of China. In this study, the complete chloroplast genome sequence of C. lindleyi was assembled and characterized from high-throughput sequencing data. The chloroplast genome is 151,678 bp in length, consisting of a large single-copy (LSC) and a small single-copy (SSC) regions of 83,043 bp and 17,311 bp, respectively, which are separated by a pair of 25,662 bp inverted repeat (IR) regions. The overall GC content of the genome is 38.18%. The genome contains 133 genes, including 88 protein-coding, 37 tRNA, and 8 rRNA genes. A phylogenetic tree reconstructed by using 16 chloroplast genomes reveals that C. lindleyi is most closely related to C. trichotomum which together forms a group that is a sister to genus Caryopteris. The work reported here is the first complete chloroplast genome of C. lindleyi which will provide useful information to the evolutionary studies on the genus of Clerodendrum.http://dx.doi.org/10.1080/23802359.2021.1981785chloroplast genomeclerodendrum lindleyiphylogenetic analysis
spellingShingle Jingxin Chen
Jiayu Chen
Long Wang
Yucheng Zhao
Minjian Qin
The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China
Mitochondrial DNA. Part B. Resources
chloroplast genome
clerodendrum lindleyi
phylogenetic analysis
title The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China
title_full The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China
title_fullStr The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China
title_full_unstemmed The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China
title_short The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China
title_sort complete chloroplast genome of clerodendrum lindleyi decne ex planch tubiflorae verbenaceae from nanjing china
topic chloroplast genome
clerodendrum lindleyi
phylogenetic analysis
url http://dx.doi.org/10.1080/23802359.2021.1981785
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