The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China
Clerodendrum lindleyi Decne. ex Planch. is a Chinese medicinal plant in the Lingnan region of China. In this study, the complete chloroplast genome sequence of C. lindleyi was assembled and characterized from high-throughput sequencing data. The chloroplast genome is 151,678 bp in length, consisting...
Main Authors: | , , , , |
---|---|
Format: | Article |
Language: | English |
Published: |
Taylor & Francis Group
2021-11-01
|
Series: | Mitochondrial DNA. Part B. Resources |
Subjects: | |
Online Access: | http://dx.doi.org/10.1080/23802359.2021.1981785 |
_version_ | 1797638698809950208 |
---|---|
author | Jingxin Chen Jiayu Chen Long Wang Yucheng Zhao Minjian Qin |
author_facet | Jingxin Chen Jiayu Chen Long Wang Yucheng Zhao Minjian Qin |
author_sort | Jingxin Chen |
collection | DOAJ |
description | Clerodendrum lindleyi Decne. ex Planch. is a Chinese medicinal plant in the Lingnan region of China. In this study, the complete chloroplast genome sequence of C. lindleyi was assembled and characterized from high-throughput sequencing data. The chloroplast genome is 151,678 bp in length, consisting of a large single-copy (LSC) and a small single-copy (SSC) regions of 83,043 bp and 17,311 bp, respectively, which are separated by a pair of 25,662 bp inverted repeat (IR) regions. The overall GC content of the genome is 38.18%. The genome contains 133 genes, including 88 protein-coding, 37 tRNA, and 8 rRNA genes. A phylogenetic tree reconstructed by using 16 chloroplast genomes reveals that C. lindleyi is most closely related to C. trichotomum which together forms a group that is a sister to genus Caryopteris. The work reported here is the first complete chloroplast genome of C. lindleyi which will provide useful information to the evolutionary studies on the genus of Clerodendrum. |
first_indexed | 2024-03-11T13:07:20Z |
format | Article |
id | doaj.art-44271e8442bd455d91ac0cc41d5366a2 |
institution | Directory Open Access Journal |
issn | 2380-2359 |
language | English |
last_indexed | 2024-03-11T13:07:20Z |
publishDate | 2021-11-01 |
publisher | Taylor & Francis Group |
record_format | Article |
series | Mitochondrial DNA. Part B. Resources |
spelling | doaj.art-44271e8442bd455d91ac0cc41d5366a22023-11-03T14:28:31ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-11-016113098309910.1080/23802359.2021.19817851981785The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, ChinaJingxin Chen0Jiayu Chen1Long Wang2Yucheng Zhao3Minjian Qin4School of Traditional Chinese Medicine, China Pharmaceutical UniversityDepartment of Social Sciences, China Medical UniversitySchool of Traditional Chinese Medicine, China Pharmaceutical UniversitySchool of Traditional Chinese Medicine, China Pharmaceutical UniversitySchool of Traditional Chinese Medicine, China Pharmaceutical UniversityClerodendrum lindleyi Decne. ex Planch. is a Chinese medicinal plant in the Lingnan region of China. In this study, the complete chloroplast genome sequence of C. lindleyi was assembled and characterized from high-throughput sequencing data. The chloroplast genome is 151,678 bp in length, consisting of a large single-copy (LSC) and a small single-copy (SSC) regions of 83,043 bp and 17,311 bp, respectively, which are separated by a pair of 25,662 bp inverted repeat (IR) regions. The overall GC content of the genome is 38.18%. The genome contains 133 genes, including 88 protein-coding, 37 tRNA, and 8 rRNA genes. A phylogenetic tree reconstructed by using 16 chloroplast genomes reveals that C. lindleyi is most closely related to C. trichotomum which together forms a group that is a sister to genus Caryopteris. The work reported here is the first complete chloroplast genome of C. lindleyi which will provide useful information to the evolutionary studies on the genus of Clerodendrum.http://dx.doi.org/10.1080/23802359.2021.1981785chloroplast genomeclerodendrum lindleyiphylogenetic analysis |
spellingShingle | Jingxin Chen Jiayu Chen Long Wang Yucheng Zhao Minjian Qin The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China Mitochondrial DNA. Part B. Resources chloroplast genome clerodendrum lindleyi phylogenetic analysis |
title | The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China |
title_full | The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China |
title_fullStr | The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China |
title_full_unstemmed | The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China |
title_short | The complete chloroplast genome of Clerodendrum lindleyi Decne. ex Planch. (Tubiflorae: Verbenaceae) from nanjing, China |
title_sort | complete chloroplast genome of clerodendrum lindleyi decne ex planch tubiflorae verbenaceae from nanjing china |
topic | chloroplast genome clerodendrum lindleyi phylogenetic analysis |
url | http://dx.doi.org/10.1080/23802359.2021.1981785 |
work_keys_str_mv | AT jingxinchen thecompletechloroplastgenomeofclerodendrumlindleyidecneexplanchtubifloraeverbenaceaefromnanjingchina AT jiayuchen thecompletechloroplastgenomeofclerodendrumlindleyidecneexplanchtubifloraeverbenaceaefromnanjingchina AT longwang thecompletechloroplastgenomeofclerodendrumlindleyidecneexplanchtubifloraeverbenaceaefromnanjingchina AT yuchengzhao thecompletechloroplastgenomeofclerodendrumlindleyidecneexplanchtubifloraeverbenaceaefromnanjingchina AT minjianqin thecompletechloroplastgenomeofclerodendrumlindleyidecneexplanchtubifloraeverbenaceaefromnanjingchina AT jingxinchen completechloroplastgenomeofclerodendrumlindleyidecneexplanchtubifloraeverbenaceaefromnanjingchina AT jiayuchen completechloroplastgenomeofclerodendrumlindleyidecneexplanchtubifloraeverbenaceaefromnanjingchina AT longwang completechloroplastgenomeofclerodendrumlindleyidecneexplanchtubifloraeverbenaceaefromnanjingchina AT yuchengzhao completechloroplastgenomeofclerodendrumlindleyidecneexplanchtubifloraeverbenaceaefromnanjingchina AT minjianqin completechloroplastgenomeofclerodendrumlindleyidecneexplanchtubifloraeverbenaceaefromnanjingchina |