SSU rRNA sequencing data for bacterial communities associated with Vibrio-infected rainbow trout (Oncorhynchus mykiss)
Vibrio anguillarum infection in aquacultured trout, besides its own harmful effects, can also make the fish more susceptible to other infections, both by swamping the host's immune system and by creating the skin lesions that serve as a direct gateway for opportunistic bacteria. Tissue samples...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Elsevier
2022-12-01
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| Series: | Data in Brief |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340922009556 |
| _version_ | 1828288612123279360 |
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| author | Aleksey Morozov Alina Vasileva Natalia Chechkova Tamara Kuchko Ekaterina Borvinskaya Irina Sukhovskaya |
| author_facet | Aleksey Morozov Alina Vasileva Natalia Chechkova Tamara Kuchko Ekaterina Borvinskaya Irina Sukhovskaya |
| author_sort | Aleksey Morozov |
| collection | DOAJ |
| description | Vibrio anguillarum infection in aquacultured trout, besides its own harmful effects, can also make the fish more susceptible to other infections, both by swamping the host's immune system and by creating the skin lesions that serve as a direct gateway for opportunistic bacteria. Tissue samples were taken from the intestines, spleen and skin lesions of cage-grown rainbow trout suffering from natural Vibrio infections of varying severity. In addition, a water sample was taken to document the planktonic bacteria inhabiting the fish farm at the time of the study. Total DNA was isolated from these samples and used to produce v3-v4 SSU rRNA amplicons, which were then sequenced on Illumina MiSeq (2 × 300 bp) and assembled into 97% identity OTUs. This dataset allows analysis of bacteria co-colonizing the skin and intestines of infected fish along with the pathogenic Vibrio anguillarum, as well as provides information on the spread of bacteria between various bodily compartments of trout. |
| first_indexed | 2024-04-13T10:08:23Z |
| format | Article |
| id | doaj.art-44be1407e71d4de58c7d78f68e64f840 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-13T10:08:23Z |
| publishDate | 2022-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-44be1407e71d4de58c7d78f68e64f8402022-12-22T02:51:01ZengElsevierData in Brief2352-34092022-12-0145108752SSU rRNA sequencing data for bacterial communities associated with Vibrio-infected rainbow trout (Oncorhynchus mykiss)Aleksey Morozov0Alina Vasileva1Natalia Chechkova2Tamara Kuchko3Ekaterina Borvinskaya4Irina Sukhovskaya5Limnological Institute SB RAS, 3, Ulan-Batorskaya, Irkutsk 664033, Russia; Corresponding author.Petrozavodsk StateUniversity, 33, Lenina st., Petrozavodsk 185910, RussiaPetrozavodsk StateUniversity, 33, Lenina st., Petrozavodsk 185910, RussiaPetrozavodsk StateUniversity, 33, Lenina st., Petrozavodsk 185910, RussiaIrkutsk State University,1, Karla Marksa st., Irkutsk 664003, RussiaPetrozavodsk StateUniversity, 33, Lenina st., Petrozavodsk 185910, Russia; Institute of Biology of Karelian Research Centre RAS, 11, Pushkinskayast., Petrozavodsk 185910, RussiaVibrio anguillarum infection in aquacultured trout, besides its own harmful effects, can also make the fish more susceptible to other infections, both by swamping the host's immune system and by creating the skin lesions that serve as a direct gateway for opportunistic bacteria. Tissue samples were taken from the intestines, spleen and skin lesions of cage-grown rainbow trout suffering from natural Vibrio infections of varying severity. In addition, a water sample was taken to document the planktonic bacteria inhabiting the fish farm at the time of the study. Total DNA was isolated from these samples and used to produce v3-v4 SSU rRNA amplicons, which were then sequenced on Illumina MiSeq (2 × 300 bp) and assembled into 97% identity OTUs. This dataset allows analysis of bacteria co-colonizing the skin and intestines of infected fish along with the pathogenic Vibrio anguillarum, as well as provides information on the spread of bacteria between various bodily compartments of trout.http://www.sciencedirect.com/science/article/pii/S2352340922009556TroutVibriosisSSU rRNAMetabarcodingGut bacteriaSpleen |
| spellingShingle | Aleksey Morozov Alina Vasileva Natalia Chechkova Tamara Kuchko Ekaterina Borvinskaya Irina Sukhovskaya SSU rRNA sequencing data for bacterial communities associated with Vibrio-infected rainbow trout (Oncorhynchus mykiss) Data in Brief Trout Vibriosis SSU rRNA Metabarcoding Gut bacteria Spleen |
| title | SSU rRNA sequencing data for bacterial communities associated with Vibrio-infected rainbow trout (Oncorhynchus mykiss) |
| title_full | SSU rRNA sequencing data for bacterial communities associated with Vibrio-infected rainbow trout (Oncorhynchus mykiss) |
| title_fullStr | SSU rRNA sequencing data for bacterial communities associated with Vibrio-infected rainbow trout (Oncorhynchus mykiss) |
| title_full_unstemmed | SSU rRNA sequencing data for bacterial communities associated with Vibrio-infected rainbow trout (Oncorhynchus mykiss) |
| title_short | SSU rRNA sequencing data for bacterial communities associated with Vibrio-infected rainbow trout (Oncorhynchus mykiss) |
| title_sort | ssu rrna sequencing data for bacterial communities associated with vibrio infected rainbow trout oncorhynchus mykiss |
| topic | Trout Vibriosis SSU rRNA Metabarcoding Gut bacteria Spleen |
| url | http://www.sciencedirect.com/science/article/pii/S2352340922009556 |
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