The complete chloroplast genome sequencing data of Juniperus sabina L. (Cupressaceae Bartl.) from Kazakhstan
The genus Juniperus L. (Cupressaceae Bartl.) is consisting of about 75 species that are divided into sections Caryocedrus Endlicher, Sabina (Miller) Spach, and Juniperus (syn: sect. Oxycedrus Spach). Juniperus sabina L. from section Sabina is an important shrub for the maintenance of the ecosystem i...
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| Format: | Article |
| Language: | English |
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Elsevier
2022-12-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340922008496 |
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| author | Shyryn Almerekova Moldir Yermagambetova Saule Abugalieva Yerlan Turuspekov |
| author_facet | Shyryn Almerekova Moldir Yermagambetova Saule Abugalieva Yerlan Turuspekov |
| author_sort | Shyryn Almerekova |
| collection | DOAJ |
| description | The genus Juniperus L. (Cupressaceae Bartl.) is consisting of about 75 species that are divided into sections Caryocedrus Endlicher, Sabina (Miller) Spach, and Juniperus (syn: sect. Oxycedrus Spach). Juniperus sabina L. from section Sabina is an important shrub for the maintenance of the ecosystem in mountainous regions and a source of medicinal compounds. The species is monoecious, rarely dioecious, and distributed in Europe, Central Asia, China, and Mongolia. The goal of the present study was to sequence and reconstruct the complete chloroplast genome of J. sabina. De novo chloroplast (cp) genome assembly for J. sabina was conducted using Illumina paired-end reads. The assembled cp genome size is 127,646 bp in length and has a typical circular DNA molecule. The genome encodes 118 genes, including 82 protein-coding genes, 32 tRNA genes, and 4 rRNA genes, the overall GC content is 34,36%. The complete cp genome nucleotide sequence of J. sabina was deposited to the NCBI (National Center for Biotechnology Information) under accession number OL467323. The raw data in fastq format was deposited to the NCBI sequence read archive under accession number SRR21515769. |
| first_indexed | 2024-04-11T07:15:23Z |
| format | Article |
| id | doaj.art-44e295f949604516a6830a8e6027feb9 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-11T07:15:23Z |
| publishDate | 2022-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-44e295f949604516a6830a8e6027feb92022-12-22T04:37:57ZengElsevierData in Brief2352-34092022-12-0145108644The complete chloroplast genome sequencing data of Juniperus sabina L. (Cupressaceae Bartl.) from KazakhstanShyryn Almerekova0Moldir Yermagambetova1Saule Abugalieva2Yerlan Turuspekov3Molecular Genetics Laboratory, Institute of Plant Biology and Biotechnology, Almaty, KazakhstanMolecular Genetics Laboratory, Institute of Plant Biology and Biotechnology, Almaty, Kazakhstan; Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty, KazakhstanMolecular Genetics Laboratory, Institute of Plant Biology and Biotechnology, Almaty, Kazakhstan; Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty, KazakhstanMolecular Genetics Laboratory, Institute of Plant Biology and Biotechnology, Almaty, Kazakhstan; Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty, Kazakhstan; Corresponding author.The genus Juniperus L. (Cupressaceae Bartl.) is consisting of about 75 species that are divided into sections Caryocedrus Endlicher, Sabina (Miller) Spach, and Juniperus (syn: sect. Oxycedrus Spach). Juniperus sabina L. from section Sabina is an important shrub for the maintenance of the ecosystem in mountainous regions and a source of medicinal compounds. The species is monoecious, rarely dioecious, and distributed in Europe, Central Asia, China, and Mongolia. The goal of the present study was to sequence and reconstruct the complete chloroplast genome of J. sabina. De novo chloroplast (cp) genome assembly for J. sabina was conducted using Illumina paired-end reads. The assembled cp genome size is 127,646 bp in length and has a typical circular DNA molecule. The genome encodes 118 genes, including 82 protein-coding genes, 32 tRNA genes, and 4 rRNA genes, the overall GC content is 34,36%. The complete cp genome nucleotide sequence of J. sabina was deposited to the NCBI (National Center for Biotechnology Information) under accession number OL467323. The raw data in fastq format was deposited to the NCBI sequence read archive under accession number SRR21515769.http://www.sciencedirect.com/science/article/pii/S2352340922008496Juniperus sabinaIllumina sequencingChloroplast genomeNext-generation sequencingNovaseqKazakhstan |
| spellingShingle | Shyryn Almerekova Moldir Yermagambetova Saule Abugalieva Yerlan Turuspekov The complete chloroplast genome sequencing data of Juniperus sabina L. (Cupressaceae Bartl.) from Kazakhstan Data in Brief Juniperus sabina Illumina sequencing Chloroplast genome Next-generation sequencing Novaseq Kazakhstan |
| title | The complete chloroplast genome sequencing data of Juniperus sabina L. (Cupressaceae Bartl.) from Kazakhstan |
| title_full | The complete chloroplast genome sequencing data of Juniperus sabina L. (Cupressaceae Bartl.) from Kazakhstan |
| title_fullStr | The complete chloroplast genome sequencing data of Juniperus sabina L. (Cupressaceae Bartl.) from Kazakhstan |
| title_full_unstemmed | The complete chloroplast genome sequencing data of Juniperus sabina L. (Cupressaceae Bartl.) from Kazakhstan |
| title_short | The complete chloroplast genome sequencing data of Juniperus sabina L. (Cupressaceae Bartl.) from Kazakhstan |
| title_sort | complete chloroplast genome sequencing data of juniperus sabina l cupressaceae bartl from kazakhstan |
| topic | Juniperus sabina Illumina sequencing Chloroplast genome Next-generation sequencing Novaseq Kazakhstan |
| url | http://www.sciencedirect.com/science/article/pii/S2352340922008496 |
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